| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0334 |
|---|
| Symbol | |
|---|
| ID | 8251419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 390117 |
|---|
| End bp | 391346 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644933982 |
|---|
| Product | Endoribonuclease L-PSP |
|---|
| Protein accession | YP_003090620 |
|---|
| Protein GI | 255530248 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.452474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG TACTTTTAAT GTTGTTTTTA AGTAGCGGTT ATTTTTCGGT TTCTGCGCAA
AATAACCGGT CATCATCATA TGCTGATAAA TCCAACACCG TGGTTAAACA TATTGGAGCA
GCTAAGGCAA CCGGTGGCGC ATCGGCTGTA GTGGTTAATG AAGTAGCCCT TGCGCATACT
TCACAGTTTT TACCGGTAGA TAAAACCGGG CAGCTGCTGG GCAAAAATGA TCCTAAAAAA
CAGCTGGACC AGGTTTTTGA AAACATTGGC GGGGCCCTGA AAGCTGCGGG CAGCAGCCTG
GACCAGATCG TAAAGATCAA CATCTGTATT GCAGATGCCG GATTGATGCC AGAGGTTAAA
CGCTATCTTG GCAGCCGTTT CAGTGCCGGG AAAAAGCCGG CGGTTAGTTT TGTGTCGGGC
GATCTGGTCC ACCCCGATGC ACTTATTGGT ATGGACGTAG TTGCCGTAGC CCCATCTGCA
GCAACAAAGG TAAAATACCT GCAGCCTGCA AATCTATGGA GCGCCAAACA GCAGGCATCA
GTTGCCATTT TACCGGCCGG AGGTGTGGTG TATGTATCGG GGCAAGCGGC ACAAGGAAAA
ATTGCGGAAG CAACACGGGA AACACTGAAG CAGCTCGAGG CAACCTTACA TCATTTAGGA
TTAAAAAAGG AAGACATTGT GCAGCTCAAA TCATTCATTT GTCCAGCAAC CGACATCCGT
ATTGTGGAAC AGGAAATGGC GGATTTTTTT GCAGGCATGA CCATTCCGCC AACTGTGTAT
GTCGACTGGC TCAGCACTAA CCCGGTGGTC GAAATAGAGC TCATTGCTGC GGCTCCCAAA
AGTTTACAAA AGCCCGGAAA GCAGATTGAT TTTATTACAC CTCCGGGGAT GACGGCATCA
CCGGTATATG CCAAAGTTAC CCGGGTCAAT TATGGCAAAA AAGTATACTT TTCCTCATTG
TATGGCGAAA ATGCAACCCA TGCAAAAGCA GAAGTGGCAG AGATATATAC CTCGCTGGAA
AAAATAGCAA AGCAGTCGGG TACCGACCTC AACCACCTGG CCAAGGCTAC CTATTATGTG
GCCAACGACA GTACCAGCAA TGAATTAAAC GAGATCAGGC CAAAGTATTA TAAAGCCGAT
AGTCCTCCGG CAGCCTCTAA GGCTAAGGTA AAGGGGGTAG GTTTAAAAGA TAAAGGGATT
TGTATAGATA TGATCGGCGT ATGTTTTTAA
|
|---|
| Protein sequence | MKKVLLMLFL SSGYFSVSAQ NNRSSSYADK SNTVVKHIGA AKATGGASAV VVNEVALAHT
SQFLPVDKTG QLLGKNDPKK QLDQVFENIG GALKAAGSSL DQIVKINICI ADAGLMPEVK
RYLGSRFSAG KKPAVSFVSG DLVHPDALIG MDVVAVAPSA ATKVKYLQPA NLWSAKQQAS
VAILPAGGVV YVSGQAAQGK IAEATRETLK QLEATLHHLG LKKEDIVQLK SFICPATDIR
IVEQEMADFF AGMTIPPTVY VDWLSTNPVV EIELIAAAPK SLQKPGKQID FITPPGMTAS
PVYAKVTRVN YGKKVYFSSL YGENATHAKA EVAEIYTSLE KIAKQSGTDL NHLAKATYYV
ANDSTSNELN EIRPKYYKAD SPPAASKAKV KGVGLKDKGI CIDMIGVCF
|
|---|
| |