Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0211 |
Symbol | sdhA |
ID | 8251296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 247508 |
End bp | 249487 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644933861 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_003090499 |
Protein GI | 255530127 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.24526 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGATT TGAATTCAAA CATACCAGAG GGAGAATTAA CCACAAAGTG GACTAAGTAT AAGTCTTCTG TGCCTTTGGT TAACCCGTCA AATAAAAGAA CGATAGAGGT GATCATTGTT GGCTCAGGTT TAGCAGGTGC TTCGGCAGCG GCAACACTGG CTGAAATGGG TTATAAAGTG AAGTGTTTCT GCTTCCAGGA TTCACCACGC AGAGCACATT CCATTGCAGC ACAGGGTGGT ATCAATGCAG CAAAGAACTA CCAGAACGAC GGCGACAGTG TATACCGTTT GTTTTATGAT ACCATTAAAG GCGGCGATTA CCGTGCACGC GAAGCCAACG TACACCGTTT GGCAGAAGTG AGTGCAAACA TTATAGATCA GTGTGTGGCA CAGGGTGTTC CGTTGGCCAG GGAGTACGGT GGTTTGCTGG ACAACCGCTC TTTTGGGGGT ACACAGGTGC AAAGAACATT TTATGCAGCC GGACAAACCG GTCAGCAATT GCTGTTGGGT GCATATTCTG CTTTGGAGCG CCAGATCGGT ATGGGTAAGG TAGAAATGTT TACCCGTCAT GAAATGCTGG AAGTAGTAAA AATTGATGGT AAAGCACGTG GTATCATTGC CCGGAACCTG ATCACAGGTG AAATTGAGCG TCATTTCGGC CACGCTGTAG TATTGGGAAC AGGTGGTTAC GGAAACGTTT TTTACCTGTC TACAAATGCT ATGGGCAGTA ATGTAACCGC AGCCTGGAAA GCACATAAAC AGGGGGCTTA TTTTGCCAAT CCCTGCTATA CACAAATCCA CCCTACCTGT ATCCCGGTTT CGGGCGACCA TCAGAGTAAG CTTACGCTGA TGTCTGAATC ACTGCGGAAT GATGGCAGGA TTTGGGTGCC GAAGAAAAAA GATGATCTGC GCAAGGCTTC TGAAATCCCT GAAGATGAAA GGGATTATTA CCTGGAGCGC AGATACCCTG CTTTTGGTAA CCTGGTACCG CGCGATGTAG CTTCAAGAGC GGCAAAAGAA CGCTGCGATG CGGGTTATGG TGTGGGCGCG TCTAAACTGG CTGTATACCT CGATTTTAAA GCCAATACAG AACGTTATGG TCGTATTGAG GCTGCTAAGG CCGGAAACCA CAATCCTGAT AAGGAAACCT GTATGCGTCT GGGTACTGAG GTGATCAAGG CAAAATATGG TAACCTGTTT GATATGTATG CACAGATCAC AGGCGAAAAT CCTTACGAAA CACCGATGCG GATCTATCCT GCAGTGCATT ATACCATGGG CGGACTTTGG GTAGATTATA ACCTGATGAC CAATGTACCG GGGCTGTATT GCACAGGTGA GGCTAATTTC TCTGACCATG GTGCCAACCG CTTGGGGGCC TCGGCATTGA TGCAGGGACT GGCAGATGGT TATTTTGTAT TGCCTTATAC CATTGGGGCA TATTTATCGA AAGAGATCTC TGTGAAGGCC ATTCCTACAG ATCACCCGGC TTTTGTCGAA GCCGAGGCAA GGGCAAAAGG TATTCTGGAT ACGCTGATCA ACATCAAAGG GACAAAATCG GTAGATCATT TCCATAAACG CCTGGGTCAC ATCATGTGGG AAAAATGCGG TATGGCCCGT AACGAAAAGG GATTGAAGGA AGCGATTGAA GAGATCAGAG CATTGCGTGC CGAGTTCTGG AGAGATGTTC GCGTGCCGGG ATCGGTTGAT GAGCTGAATA CGGAACTGGA AAAGGCAGGC CGTGTAGCCG ATTTTATAGA ACTGGGTGAG TTGATGTGCA TAGATGCATT AAACCGCAAC GAAAGCTGCG GCGGCCATTT CCGCGAAGAA TATCAAACGG AAGAAGGTGA GGCACTGCGT GACGATGAGC ATTATGCTTA CGTTGCCGCC TGGGAATTTA AGGAAGGAGT AAACTTTGAA CTGCATAAAG AAGAGTTGAA GTTTGAAAAT ATTAAAGTAG CACAAAGAAG TTATAAATAG
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Protein sequence | MSDLNSNIPE GELTTKWTKY KSSVPLVNPS NKRTIEVIIV GSGLAGASAA ATLAEMGYKV KCFCFQDSPR RAHSIAAQGG INAAKNYQND GDSVYRLFYD TIKGGDYRAR EANVHRLAEV SANIIDQCVA QGVPLAREYG GLLDNRSFGG TQVQRTFYAA GQTGQQLLLG AYSALERQIG MGKVEMFTRH EMLEVVKIDG KARGIIARNL ITGEIERHFG HAVVLGTGGY GNVFYLSTNA MGSNVTAAWK AHKQGAYFAN PCYTQIHPTC IPVSGDHQSK LTLMSESLRN DGRIWVPKKK DDLRKASEIP EDERDYYLER RYPAFGNLVP RDVASRAAKE RCDAGYGVGA SKLAVYLDFK ANTERYGRIE AAKAGNHNPD KETCMRLGTE VIKAKYGNLF DMYAQITGEN PYETPMRIYP AVHYTMGGLW VDYNLMTNVP GLYCTGEANF SDHGANRLGA SALMQGLADG YFVLPYTIGA YLSKEISVKA IPTDHPAFVE AEARAKGILD TLINIKGTKS VDHFHKRLGH IMWEKCGMAR NEKGLKEAIE EIRALRAEFW RDVRVPGSVD ELNTELEKAG RVADFIELGE LMCIDALNRN ESCGGHFREE YQTEEGEALR DDEHYAYVAA WEFKEGVNFE LHKEELKFEN IKVAQRSYK
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