| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3553 |
|---|
| Symbol | |
|---|
| ID | 3713872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 4025043 |
|---|
| End bp | 4026461 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_349282 |
|---|
| Protein GI | 77459775 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.32329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGCT CGGAGGTGGG TTGCGTCGAA TCGATCCTAG GGCTGAGAAT CAAGACAATC
AAAAAATTGT CATGGATACA GCCCGACATG CCGCGCTCCC GCTACAAGAC CCTTGTCGAC
ACCTTTGCGG CTGACATCCG CGCCGGCCGA CTGCTGCCTG GCACTCGCTT ACCGACTCAC
CGGCAATTGG CGGCCAGCGA AGGGCTGGCG CTGGTCACCG CGTCGCGGGT GTACGCCGAG
CTCGAGGCCA TGGGCCTGGT CAGCGGCGAA GCCGGGCGCG GCACGTTTGT GCGGGAAACG
TCGTTGTTGC CAGGGCAGGG CATCGACCAG AAAGACGTCG CGGTGGGCAT GATCGACCTC
AACTTCAACT ACCCATCATT GCCGGGGCAG GCCGAGTTGC TGCGCACCGC GTTGCGGCAG
CTGGCGCTGT CCGGCGACCT CGAAGCGCTG CTGCGCTATC AGCCCCACGC CGGTCGCCAG
CATGAAAGGG TCTCGGTGGC GCGGCATCTG CAAACACGCG GTTTGAGTGT CGAGGCCGAG
CAGGTGTTGA TCGTCAACGG CGCGCAGCAA GGGCTGGCGG TGACGCTGAT GGCGCTGCTC
AAGCCTGGCG ATGTGATTGC CGCCGACGCC TTGACCTATT CCGGATTCAA AGTGCTGGCC
GAAGCGCTGC ACCTGGAAGT GGTGGCGATT CCCGTGACTG AAGGCGGGCC GGATCTGACA
GCCCTCGACA AACTCTGCCG CCAACGACCG GTGCGTGCGG TGTACAGCAT GCCGACCCTG
CACAACCCAC TGGGCTGGGT GATGCCTTTG GAGCAACGTG AGGATTTGAT CGCGATTGCC
CGCCGACATG ATCTGACAAT CATCGAGGAC GCGGCCTACG CCTTTCTGGT CGATAACCCG
CCACCCCCGT TGGCGGTTCT GGCACCGGAA CGCACGGTCT ACGTGTCGGG CCTGTCGAAA
AACATCGCCA CCGGCCTGCG TGTCGGTTTC ATCGCCGCGC CGGTCGAGCG GGTGGCGGCG
CTGGAGCGGA TCATCCGCGC CACTACCTGG AACACCCCCG GCGTGATGAC CGCCATCGCC
TGCGGCTGGC TCGACGACGG CACCGTCACC TTGCTCGAAG CGCAAAAGCG TAGCGACGCC
CAGGTCAGGC AAACCCTCGC TGCGCAGGTT CTCGAAGGCC TCCCCACTGT CGGCCATCCT
TCTTCGTATT TCCTCTGGCT GCCGCTACCG GAAGACGTTC GGGCCGACCA TATCGTGGTC
GAGTTGATGC ACGAACAGGT TTCCGTCACC ACCGCCGAAC CTTTCACCGT GTCTACTCAT
GTGCCCCACG CGATTCGCCT GGCGCTGGGC TCGGTGGACA TGCTTGTCCT GCGTCAAGCC
TTGCTCAAAG TCCGCCAGGT TGTGGGCGCC TACCTGTAG
|
|---|
| Protein sequence | MWRSEVGCVE SILGLRIKTI KKLSWIQPDM PRSRYKTLVD TFAADIRAGR LLPGTRLPTH
RQLAASEGLA LVTASRVYAE LEAMGLVSGE AGRGTFVRET SLLPGQGIDQ KDVAVGMIDL
NFNYPSLPGQ AELLRTALRQ LALSGDLEAL LRYQPHAGRQ HERVSVARHL QTRGLSVEAE
QVLIVNGAQQ GLAVTLMALL KPGDVIAADA LTYSGFKVLA EALHLEVVAI PVTEGGPDLT
ALDKLCRQRP VRAVYSMPTL HNPLGWVMPL EQREDLIAIA RRHDLTIIED AAYAFLVDNP
PPPLAVLAPE RTVYVSGLSK NIATGLRVGF IAAPVERVAA LERIIRATTW NTPGVMTAIA
CGWLDDGTVT LLEAQKRSDA QVRQTLAAQV LEGLPTVGHP SSYFLWLPLP EDVRADHIVV
ELMHEQVSVT TAEPFTVSTH VPHAIRLALG SVDMLVLRQA LLKVRQVVGA YL
|
|---|
| |