| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2188 |
|---|
| Symbol | |
|---|
| ID | 3715729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 2471552 |
|---|
| End bp | 2473807 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_347920 |
|---|
| Protein GI | 77458415 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAAG ATTTGAAGTT CCCGGTGTTG ATCGTCCACC GCGACATCAA GGCCGACACG
GTTGCCGGTG ACCGCATCCG CGGCATTGCC CGAGAGCTGG AGCTGGAAGG TTTCAGTATC
GTTTCGGCCA CCGACTACAC CGAAGGCCGG CTCGTGGCGT CGACCCACCA TGGTCTGGCG
TGCATGCTGA TCGCCGCGGA AGACGCCAGC ACCAACTCCC ATCTGTTGCA GAACATGGCC
GAACTGATCG GTCTGGCCCG GGTGCGGGCG CCGGATCTGC CGATCTTTGC ACTCGGCGAG
CAAGTAACCC TGGAAAACGC CCCGGCCGAT GCGATGGCCG AACTCAACCA GTTACGCGGC
ATTCTCTACC TGTTCGAAGA CACCGTGCCG TTTCTCGCCC GACAAGTGGC GCGGGCAGCG
CGCAAATACC TGGACGGCCT GTTGCCGCCA TTCTTCAAGG CGCTGGTCCA GCACACCGCC
GATTCCAACT ATTCCTGGCA CACCCCCGGT CACGGCGGCG GGGTGGCCTA TCACAAGAGT
CCGGTGGGGC AGGCGTTTCA TCAGTTCTTC GGGGAAAACA CCCTGCGCTC CGATTTATCG
GTCTCGGTGC CGGAGCTGGG TTCCTTGCTC GATCACACCG GGCCGCTGGC CGAGGCGGAA
GCGCGGGCCG CGCGCAATTT CGGCGCCGAT CACACCTTTT TCGTGATCAA TGGCACCTCG
ACCGCCAACA AGATCGTCTG GCACTCGATG GTCGGGCGCG ATGATCTGGT GCTGGTGGAT
CGCAACTGCC ACAAGTCGGT GCTGCACGCG ATCATCATGA CCGGCGCGAT TCCGCTGTAC
CTGTGCCCGG AGCGCAACGA GCTGGGGATC ATCGGGCCGA TCCCGCTCAG TGAATTCAGT
CGTGAATCGA TCCAGGCCAA GATCGACGCC AGCCCGTTGA CCAAGGGCCG CGAACCGAAA
GTCAAACTGG CGGTGATCAC CAACTCCACT TACGACGGCC TCTGCTACAA CGCCGAGCTG
ATCAAGCAGA GCCTGGGCAA CAGTGTCGAA GTGTTGCATT TCGACGAGGC CTGGTACGCC
TACGCCGCGT TTCACGAATT CTTTGCCGGC CGTTACGGCA TGGCCACCTC GCGCAGCGAG
GACAGTCCGC TGGTGTTTAC CACCCACTCC ACCCACAAAC TGTTGGCGGC GTTCAGTCAG
GCCTCGATGA TTCATGTTCA GGACGGTGGG GCGCGGCAGC TGGATCGCGA CCGGTTCAAC
GAAGCGTTCA TGATGCACAT CTCGACGTCG CCGCAGTACA GCATCATTGC TTCGCTGGAC
GTCGCCTCGG CGATGATGGA AGGCCCGGCC GGACGCTCGC TGCTGCAGGA AACCTTCGAC
GAAGCCCTGA GCTTTCGCCG GGCCTTGGCC AATCTGCGTC AGCACATCGC CGCTGACGAT
TGGTGGTTCT CGATCTGGCA GCCGCCGGGT GTCGAGGGCA TCGACCGGGT GCAGACCGAG
GACTGGCTGC TGCAACCCGA TGCGGACTGG CACGGTTTCG GCGAGGTCAG CGACGACTAC
GTACTGCTCG ACCCGATCAA GGTCACCCTG GTCATGCCGG GCCTGACCGC CGGCGGCGCT
TTGAGCGACA AGGGCATCCC GGCGGCCGTG GTCAGCCGTT TCCTCTGGGA GCGCGGGCTG
GTGGTGGAGA AAACCGGTCT GTATTCATTT CTGGTGCTGT TCTCCATGGG CATCACCAAG
GGCAAGTGGA GCACGCTCCT GACCGAACTG CTGGAGTTCA AGCGCAGCTA CGACGCCAAC
ATCAGTCTCG ACACCTGCCT GAAGTGTGTC GAGCAGGAAG ATCCTGTGCG CTATCGCGGC
ATGGGCCTGC GCGATTTGTG CGATCAGCTT CACGCCTGCT ATCGCAGCAA CGCGACCGCC
AGACACCTCA AGCGCATGTA CACGGTGCTG CCGGAAATCG CGATGAAACC GGCCCACGCT
TACGATCAAT TGGTGCGCGG CGAAGTCGAG GCGGTGCCGA TCGATGAGCT GGAAGGCCGG
GTGGCGGCGG TGATGCTGGT GCCGTACCCG CCGGGCATTC CGCTGATCAT GCCCGGCGAA
CGGTTTACCG AATCCACGCG CTCGATCATC GAATACCTCA GGTTTGCCCG CACGTTCGAC
ACAACGTTTC CGGGGTTCGT GGTCGATGTG CACGGTCTGC AACACGAAGA TGAGGGCAAT
GGGCGGCACT ACACCGTCGA TTGCGTCAAG GAATGA
|
|---|
| Protein sequence | MYKDLKFPVL IVHRDIKADT VAGDRIRGIA RELELEGFSI VSATDYTEGR LVASTHHGLA
CMLIAAEDAS TNSHLLQNMA ELIGLARVRA PDLPIFALGE QVTLENAPAD AMAELNQLRG
ILYLFEDTVP FLARQVARAA RKYLDGLLPP FFKALVQHTA DSNYSWHTPG HGGGVAYHKS
PVGQAFHQFF GENTLRSDLS VSVPELGSLL DHTGPLAEAE ARAARNFGAD HTFFVINGTS
TANKIVWHSM VGRDDLVLVD RNCHKSVLHA IIMTGAIPLY LCPERNELGI IGPIPLSEFS
RESIQAKIDA SPLTKGREPK VKLAVITNST YDGLCYNAEL IKQSLGNSVE VLHFDEAWYA
YAAFHEFFAG RYGMATSRSE DSPLVFTTHS THKLLAAFSQ ASMIHVQDGG ARQLDRDRFN
EAFMMHISTS PQYSIIASLD VASAMMEGPA GRSLLQETFD EALSFRRALA NLRQHIAADD
WWFSIWQPPG VEGIDRVQTE DWLLQPDADW HGFGEVSDDY VLLDPIKVTL VMPGLTAGGA
LSDKGIPAAV VSRFLWERGL VVEKTGLYSF LVLFSMGITK GKWSTLLTEL LEFKRSYDAN
ISLDTCLKCV EQEDPVRYRG MGLRDLCDQL HACYRSNATA RHLKRMYTVL PEIAMKPAHA
YDQLVRGEVE AVPIDELEGR VAAVMLVPYP PGIPLIMPGE RFTESTRSII EYLRFARTFD
TTFPGFVVDV HGLQHEDEGN GRHYTVDCVK E
|
|---|
| |