| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_0539 |
|---|
| Symbol | |
|---|
| ID | 3713009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 625377 |
|---|
| End bp | 627956 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 859 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_346272 |
|---|
| Protein GI | 77456767 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.309722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCAA AACCACCCTC CATAGGCGTC ACGACCGTCG AAGTGCACAA TCCGCCTTCG
AGACCTGTGA CCGGACATTT TCCGGAGCAC TCCACTTCGC CTCCGGTTCC TGCGGACACC
CGCCTGTTCA CGCCGCGTCC CGCACACGCC AGCCTCCCGG CAATCGACGG CCCGGACACG
ATCTCTCCCG CACCGTCCGT GACATTCGCC GAAAGCCTCT CAAACCCGAC GGCTTCACCG
AGAAGACTCA GGCTCGAAAC CTATGGCATT CCTTCCGGTG TCCGACTGCC GGAGGCCGAC
ACACAGGGTT TCAGAACCTT CAAGGGGCGA CTGTTCGTCG AAGCGTACGA TGGCAGCATT
GTGCAAGTTG GCCTGGACCC TGAAAGCCGC ATCTACCGCA TCAGACTCAG CAATGAGTTG
AACCCCTCGG GCCCTGTTCT CTTGCAGGAT CCCCAGAGCA AACGCTGGTA TCCACTGGAT
GAGTTCCAAG CCGGGCCCCT TGCACTGACT TCCAGTCGAC TGGACGCATT CCGGACAGGC
CTGGATTTCT CTGGCATCGC GCCGGACAGC GAGGGGCTGC ACAACTTCGA AGGCAAGCGC
TACGTGGTCA TTGAAAGCCG CGCCTATCAG GTGATGCGCG ACGTTGACGC CTCCTCTCCC
GCGCACACCG TCTGGCGCAT CGTCGCGTCG AAGGATCCGG TCGCCTCCGA CAGCGAAAAC
ACCTACCGCG CCAGTCGGGC CGGCTCCACC CTGGCCATCA CTCGCACTGC CGAAGGTTTT
TGGGTTCCCA GTCTGCATGG GCTCAAGGGA GGCATGCGTC GCAGTGCAAT CGCTCAGCAC
AACAAAACCT ATCTGCTCCA ACGGCATGAG CCCATCAGGA ATGCCTTCGA TGCCCTGACC
GCTTCCAACA CGCGCTATGG CGAACTCTGG CGCCGTGCCC AACCCTTGCC TGAGGGCAGT
GACGCCGAAA AGGCCGCGCT GATCGAGATC GAAGTGCATG TGATCAAGCA CACAAGAATG
CAGGCCGATT ACGTCAAGTC ACTCATCGAC AACCGGGACT GGCTGATATT GCTCAAGGCA
GGCGGACTCT ATAAAGCCGA GCTTCATGCT CAGCAGATCA ACAGAATCGA CTACTTCAAC
AAACTGCTTG CAGTCATGGA CCGCAGAGCT CTGCCAACCC TGCATGCAAT CACCGTCGAG
TCGCTCAAGC GCAACCTCGT CCACCTCGAC AAAAAGCTGA AGATCATGGA CGAGCGTCAG
ACCGTGATGG ATCAGATTCA GAAGGCTGAC CGCAGCGCCC TGGCGGTTCT GGAGGAGATG
AATCGCAAAG TGCCCACGGT GGATCAGATC CAATCCAGCC AATACAACAT TTGCCTGCGC
CTGATCTCCG ACGATCCGCA GAATCCGCAG GATCACGGCA TGCGCAGTGC CATGGCCATG
CACTTGCTCA AGCAGGATCT GAACGAAGTC TTCGGGTACT CCGAACCTCT TGCATTGCAA
TTGACGATCG AAAACATCAA AAGCGACAAA GCAGGCCTGG AGGCATTGCT CGCGTCGACA
ACGCCGGCCA AGGCAGAGTA CGTCAGGAAG GCACTGACCC TGCTCGATGC CTTTGAATCG
AAAATCGAAA CCCGGCTGAA CGATATCTTT GACCGGATTG ACAACAACCA AGAACTGCCC
GGCTACGATC AGGAAATCGA TTTCGACTTC CTCCCTGGAC AAGTTACCGG AGCCGCCGGA
GACGCGGCGC CGCGAAAGTT GTTCCGAACC CGTCAAAATG GCACTTACCG TGTGCTGGTC
GGCGTGCCGG ACACCGCTGC CGACGGCCGC ATCACCCTCA GCGTTCCCGA CCTGTTCAAA
CCGAACGATC CCCCTCAACG CTACGAAATG AAAGAAGGTG AGTGGCAGCC CGTACGTTCC
GCCCCGGCCC CGACCTCCAG ACCTCAGCTG GTCAGCGAAG CGCTGGCGCG CCTTGGTAAC
GTGGAGGCGT ACCTGGCCCA GGCTCGATTG ATGGAAAGCC GAAAGGACAA CCCGACCACC
ATTGTCGAAT ATCTGGGTGC CGAGACGGAT CGACTCGCAG GTCTGGCGAA ACACCTCGAG
CTCCTCGGGC AAACGGCAGC AGGCGCTGAA ACCTCCCACT TGATCAGCCG ACTGAAAGCT
GCCGCCGACT CAATGGGCGC CAAAGGCCAG GATATTTTGA TACGGATGTA CAAAAACAAG
GATGTGCTGG ACGTCCCGCG CCTGAACTTC CTGCTTGAGC ATGCTCAACT CAAGGTGGTC
AAAACGGTGG AGCGCAAGCA ACTGGGCAAG GGTAAAGACA AGTCATTCCT GGACGTTTAC
TCGATCATCG ACCGCTCGGA TAACACGCCC TTGTGGGAGG CCCACTTTCA CTACGACAGG
CAGGACCGCG CTGCGCTGGA TTACACCGTC AAGGGCGCAC ACCTGAAAAC CCTTGAACAG
CGCAGGCTCG GCAGCTCGTT TCAACAGCGC GAAGAACAGG CTGGTCGGCC CCACCAACGG
ATATGGCGGG AGTTCATCAG CCCCAGGGTT GCCCAGAAAC TGTTTGATCA GCTGACGTGA
|
|---|
| Protein sequence | MPAKPPSIGV TTVEVHNPPS RPVTGHFPEH STSPPVPADT RLFTPRPAHA SLPAIDGPDT
ISPAPSVTFA ESLSNPTASP RRLRLETYGI PSGVRLPEAD TQGFRTFKGR LFVEAYDGSI
VQVGLDPESR IYRIRLSNEL NPSGPVLLQD PQSKRWYPLD EFQAGPLALT SSRLDAFRTG
LDFSGIAPDS EGLHNFEGKR YVVIESRAYQ VMRDVDASSP AHTVWRIVAS KDPVASDSEN
TYRASRAGST LAITRTAEGF WVPSLHGLKG GMRRSAIAQH NKTYLLQRHE PIRNAFDALT
ASNTRYGELW RRAQPLPEGS DAEKAALIEI EVHVIKHTRM QADYVKSLID NRDWLILLKA
GGLYKAELHA QQINRIDYFN KLLAVMDRRA LPTLHAITVE SLKRNLVHLD KKLKIMDERQ
TVMDQIQKAD RSALAVLEEM NRKVPTVDQI QSSQYNICLR LISDDPQNPQ DHGMRSAMAM
HLLKQDLNEV FGYSEPLALQ LTIENIKSDK AGLEALLAST TPAKAEYVRK ALTLLDAFES
KIETRLNDIF DRIDNNQELP GYDQEIDFDF LPGQVTGAAG DAAPRKLFRT RQNGTYRVLV
GVPDTAADGR ITLSVPDLFK PNDPPQRYEM KEGEWQPVRS APAPTSRPQL VSEALARLGN
VEAYLAQARL MESRKDNPTT IVEYLGAETD RLAGLAKHLE LLGQTAAGAE TSHLISRLKA
AADSMGAKGQ DILIRMYKNK DVLDVPRLNF LLEHAQLKVV KTVERKQLGK GKDKSFLDVY
SIIDRSDNTP LWEAHFHYDR QDRAALDYTV KGAHLKTLEQ RRLGSSFQQR EEQAGRPHQR
IWREFISPRV AQKLFDQLT
|
|---|
| |