| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_0142 |
|---|
| Symbol | |
|---|
| ID | 3717492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 170960 |
|---|
| End bp | 172495 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_345875 |
|---|
| Protein GI | 77456370 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCC TGACGGTCAC GGCGCCGATT GCCACTGCCG CTCCGATGGC CGCCGCGCCA
CCGGTGTTCG GGGCGCGGAT CATCATCGGT CTGGTCGGCG TGCTGCTGGC GGTGCTGGTG
TCGGGTCTCA ACGAGATGGT GACCAAGGTC GCCCTGGCCG ACATTCGCGG CGCCCTGAGC
ATCGGTTACG ACGAAGGCAC CTGGCTGGTC GCCAGTTACA CCGCGACCTC GGTGGCGGCC
ATGGCATTCG CGCCGTGGTG CTCGGTGACC TTTTCCCTGC GTCGCTTCAC CCTGTGCGCC
ATCGGCGTGT TCACCCTGCT CGGGGTGCTT TGCCCGTTCG CCCCGAACTA CGAAAGCCTG
CTGCTGATGC GCATCCTGCA AGGCTTGGCC GGTGGTGCGC TACCGCCGAT GCTGATGACC
GTTGCCCTGC GTTTCCTACC GGCCAATATC AAACTGTATG GCCTCGCCGG TTATGCCCTG
ACCGCTACCT TCGGCCCCGG TCTCGGCACG CCGCTGGCCG GGTTGTGGAC CGAATACGTC
GGCTGGCAGT GGACGTTCTG GCAAATCATC GTGCCGTGCC TGATTGCCAT GGCGATGGTT
GCCTGGGGCA TTCCACAGGA TCCGCTGCGT CTGGAACGCC TCAATTCGTT CAACTGGAAA
GGCCTGCTGC TGGGCTTTCC GGCGATCTGC ATGCTGGTGA TCGGCCTGTT GCAGGGCAAT
CGCCTGGACT GGTTCGAGTC GAACCTGATC TGCGCTTTGC TCGGCGCCGG TTCGCTGTTG
CTGGTGGCGT TTCTGATCAA TGAATGGTCG CAGCCGATTC CGTTTTTCAA GTTGCAGATG
CTCGGCATCC GCAACCTGTC GTTCGCGCTG ATGACGCTGG CCGGGGTGCT GGTTGTGCTG
CTGGCGGTGG TGCTGATTCC ATCGAGTTAC CTGGCTCAGG TTCAGGGTTA CCGGCCGGTA
CAGACTGCGC CGATCATGTT GATCGCGGCA TTGCCGCAGT TGATCGCGCT GCCGCTGGTG
GCGGCGTTGT GCAACCTGCG CTGGGTCGAT TGTCGCTGGG TGCTCGGCAT CGGCTTGGGC
ATGTTGACGC TCTCGTGTCT GGGCGGATCG CAGCTGACCT CGGAATGGAT TCGCGACGAT
TTCTATGTCC TGCAATGGCT GCAGATTTTC GGCCAGCCGA TGGCGGTGCT GCCGTTGCTG
ATGCTGTCGA CCGGCAGCAT CCAGCCACAG GACGGGCCTT TCGCCTCGGC GTGGTTCAAC
ACCGTAAAAG GTCTGGCGGC GGTGGTCGCC ACCGGCGTGA TCGAGGCGCT GACCACTTCG
CGCCTGCATT TTCACTCGAC GATGCTGGTC GATCGCCTCG GCAACTCGCC GCTGGCCGCC
AGCAACGACC CCGGCCTCGC CCATCGCCTG CACGAACAGG CGGTGGTGCT GACTTCTTCG
GATCTTTATC TGTGCATGGC CGGCGTCGCG GTGGCGCTGA TCCTGCTGAT TCTCTGGCTG
CCGACGCGGA TCTATCCGCC TCGCGCGCCA ACCTGA
|
|---|
| Protein sequence | MTSLTVTAPI ATAAPMAAAP PVFGARIIIG LVGVLLAVLV SGLNEMVTKV ALADIRGALS
IGYDEGTWLV ASYTATSVAA MAFAPWCSVT FSLRRFTLCA IGVFTLLGVL CPFAPNYESL
LLMRILQGLA GGALPPMLMT VALRFLPANI KLYGLAGYAL TATFGPGLGT PLAGLWTEYV
GWQWTFWQII VPCLIAMAMV AWGIPQDPLR LERLNSFNWK GLLLGFPAIC MLVIGLLQGN
RLDWFESNLI CALLGAGSLL LVAFLINEWS QPIPFFKLQM LGIRNLSFAL MTLAGVLVVL
LAVVLIPSSY LAQVQGYRPV QTAPIMLIAA LPQLIALPLV AALCNLRWVD CRWVLGIGLG
MLTLSCLGGS QLTSEWIRDD FYVLQWLQIF GQPMAVLPLL MLSTGSIQPQ DGPFASAWFN
TVKGLAAVVA TGVIEALTTS RLHFHSTMLV DRLGNSPLAA SNDPGLAHRL HEQAVVLTSS
DLYLCMAGVA VALILLILWL PTRIYPPRAP T
|
|---|
| |