| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_1970 |
|---|
| Symbol | |
|---|
| ID | 8530369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 2136732 |
|---|
| End bp | 2137595 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD |
|---|
| Protein accession | YP_003259356 |
|---|
| Protein GI | 261821250 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAAAA ATAAACACAA TGGTGGAATC ACAATGTTGA AATGGGCGAG TTGCATCGTG
TTGGGGCTGT TGGCGGGATG CCAATCACTC CCTTCCTCGT TGCAGGAACA GAATAATTAT
GTACTGGAGA CCGCATTGCA GTCGCGGGCT CAGGAGTCCC GTATCCGTTT TTTGGTGATT
CACTACACGG CAGAAGATTT TGCCACTTCG CTGAATATTC TGACCGATGA GCACGTCAGC
GCCCATTATC TTATCCCCGC ACACCCGCCG TTGCAGCACG GCAAGCCGCT TGCGTGGCAA
TTGGTGCCTG AATCTCAGGC TGCCTGGCAT GCGGGAGCCA GTAGCTGGCG TGGATTTAGC
CGGTTGAATC ATTCTTCTAT CGGTATTGAG ATCGAAAACG CAGGTTATCA GCGCACGCTG
ACAGGCTATA CGTGGGCGCC GTTCACCGCT TCGCAGATTC AGCTCGTAAC CGCGCTCGCC
CACGATATTG TCGAACGTTA CCAGATTGCG CCGCAGAACG TGGTGGCGCA CAGTGATATT
GCGCCACAGC GGAAACAAGA CCCTGGGCCG CTTTTTCCCT GGCAGATGCT AGCGCAAGCG
GGCGTGGGGG CCTGGCCGGA TGTGCATCGT GTCACTTTCT ATTTAAATGG ACGACCGCCG
ATGCAACCGG TGGATGAAGC TATTTTGCTG GAAAAGCTGG GGCGCTATGG TTATTCGGTG
CCGGAAACGA TGACGGCGCG TGAGAAGCGA CAGGTGATCG CCGCTTTCCA AATGCATTTC
CGACCTGATA ACTATCAAGG TCAGCCAGAT GCGCAGAGCG AAGCGATCGC TGATGCATTG
CTGGAAAAAT ACGGCAGCCG CTAA
|
|---|
| Protein sequence | MAKNKHNGGI TMLKWASCIV LGLLAGCQSL PSSLQEQNNY VLETALQSRA QESRIRFLVI
HYTAEDFATS LNILTDEHVS AHYLIPAHPP LQHGKPLAWQ LVPESQAAWH AGASSWRGFS
RLNHSSIGIE IENAGYQRTL TGYTWAPFTA SQIQLVTALA HDIVERYQIA PQNVVAHSDI
APQRKQDPGP LFPWQMLAQA GVGAWPDVHR VTFYLNGRPP MQPVDEAILL EKLGRYGYSV
PETMTAREKR QVIAAFQMHF RPDNYQGQPD AQSEAIADAL LEKYGSR
|
|---|
| |