Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_1404 |
Symbol | |
ID | 8529794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 1520963 |
End bp | 1523416 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_003258810 |
Protein GI | 261820704 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATTC TTTCATCCGC ATTTTTACGC ATTTGTCTAT TGACGGTGTT AATGCTGCCT GCTGGATATG CCGCGGCGGC GAATGCGGGT TCTGACCCAG ATCCACAGCC CGCTCAGACT GATGCACCAG TAAAAATTAA TGTTGATGCC GAGTTGATCA AGCTGCAAAA ACAGTTGGAT AGCATCAAGC AGCAAGTCTC AGGCACCAAT AACGACAGCA AATTTGGTGC GTTGAATGAC ACGACACAGG AACTGGTGAA TAGCGCCAGC GAGCTTTCTA ATGCGGTTGC GCCGCTACGT GCTCAAATTC AGGCTCAGTT GGATGTATTA GGGCCTGCAC CAGAGCCTGG TTCCAGTCTT AATGAAACCA GTGAAGTGAC GCGTAAGCGC AATAGCCTGA ATGCGCAAAA AGCAAAAATG GATGCGCAGA TCGAACAAAT TCAGGCTTTA CGCACCAGTG CGGCTAATCT GTCGGCGCAA ATCGTTACTC TGCGCCGTAG CGCACTGAAA ACACAGTTGG CATTGAACTC CGGCAGCATT TTGGGCGGGC GTTTCTGGGC TCCGCTTGCG GCACCGCAGG CCGAGGATGT TCGCCGGCTG AGTACTTTTC AAGATCAATT CAGCGATGCT TTTATGGTGG CTTGGGAACC GGACTGGCGT TACGGCTCTG CGTTCCTGAT TCTGATTGCA ATGGCGATGA GTTCGGCAGG GCGACGGTAT CTGGAAAAGT ATCTGGCTTG GGCGGGGATC CACTGGTTAC CGGAAGGGCG CTTGCGGAGG AGTTTCTTGG CCACGGCATC GGTTATTTCA ACCGTGGTAA CGATCGGCAT TGCGGCAAAT TTAATCGATT TTACGTTCAC GCGTCATGGC GAGGCGACAG AACGCGTAGT GTCGTTCCTT GATGCGCTGG TGAGACAGGC AATCTTCTGT TCGATGATTG CTGGGCTGGG GCGAGCATTT CTGTCAAATA AACGCCCTTC GTGGCGTTTA CCCGCGATTG CGAATCCAGT CGCAAAGGCC ATGAAACCGT TTCCTGTGGT TGCCGCTGGC ATTATTCTGA TCTTCGGTTT TATTGAACAG GTGACGGCGA CAGTAGGGAC ATCGGTTGCG GCAACCATTA TGGTGAACGG CTTATCTGCA CTGTTCTTAG CCTTCACCGC AGGCACGATC ACGCTGAAAA GCGATCAAAT TCGTCGGCAG ATGGTGCATT CAGGGGAACA ACCGGAAGCG CGTTCGACGC TATCTGGCGT TATCCACCTT GCGGTATTGG CGACGTCATT CTCAATACTG GTGTCGTTGG TCATCGGTTA TATCTCACTG GCTCGTTTCC TGGCGTTCGA GCTAGTGTGG ATTGGCATGG TGTTCTCCTG CCTGTATTTG TTTTCAACGT TTATTACCGA TATCTGCGAA AGTCTCTTCT CCCCCCATAA TGCCAGTGGC AAGCGGATGA AAAATTCGCT CAATCTGGAC GATCGGCATC TGGCTCAAGC TACATTGCTT CTGTCGGCTA GCGGTAAAGT CTTTTTAATT TTGATGGCGG CTGTTGCTTT ACTAAACGGT ACGTTTGGCA CGACTACGCC ACTGGAATTG GTGCAAAAAG CCGCTGAGAT TTGGGGAGGG AAAGGGCTGG AAACATTGAG CATCGTGCCT GCTCATCTGG TTAACGCAGT GCTCTTTTTG GTGGTAGGAG TTTATGTTTT ACGCTCTTCA AAACGCTGGC TGGAGGACGA GTTTCTTCCT AAAACGACGT TAGAACGTGG GATCCGTGCA TCGCTGGTGA CGCTGTTTAG CAACATCGGC TATATCCTGA TTATTCTGCT GACGTTGGCG ACATTGGGGA TTCAATGGAA CAAGCTAGCG TGGATTGTCA GTGCGTTGTC GGTGGGTATC GGTTTTGGCT TACAGGAGAT AGTGAAGAAC TTTATCTCTG GCCTGATTCT GTTGACGGAA CGCCCGGTGA AAGTAGGGGA CTCGGTCAGT ATCAGCGGAG TCGAAGGAGA TATCCGTCGG ATTAACGTGC GTGCGACGGA AATTCAATTG GGCGACCGTT CGACGGTAAT TGTGCCGAAC TCGCAATTCA TCTCACAGAA TGTGCGCAAT ATTACCATGG GGAACCCCTT TGGGGTTGCG ACGCTGGCGC TGACGTTCCC GTTGGATATC GATCCTGAAG AAGTCCGATC CCTGTTGCTG GATGCTTATA TCAACCACGA TGCGATTTTG GAATCACCAG CACCGTCAGT GAAGTTCAGT CAGTTGACTC CTACGGGTAT GGTGCTGAGC GTAACGGGCT ATGTCAGCAG CCCGAGAATG GTCTCGGAAG CGAAGAGCGA CCTGTTGTTT GAGATCATCA AGCGGTTACG GGCATCTAAT ATTCCGCTGG CCGTACCGCA GAAGATGGTG CTGGAAAACT CGGGGGTGGC GCTGACTGAC GGCACTTCGG GCGAGGATAA ATAA
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Protein sequence | MNILSSAFLR ICLLTVLMLP AGYAAAANAG SDPDPQPAQT DAPVKINVDA ELIKLQKQLD SIKQQVSGTN NDSKFGALND TTQELVNSAS ELSNAVAPLR AQIQAQLDVL GPAPEPGSSL NETSEVTRKR NSLNAQKAKM DAQIEQIQAL RTSAANLSAQ IVTLRRSALK TQLALNSGSI LGGRFWAPLA APQAEDVRRL STFQDQFSDA FMVAWEPDWR YGSAFLILIA MAMSSAGRRY LEKYLAWAGI HWLPEGRLRR SFLATASVIS TVVTIGIAAN LIDFTFTRHG EATERVVSFL DALVRQAIFC SMIAGLGRAF LSNKRPSWRL PAIANPVAKA MKPFPVVAAG IILIFGFIEQ VTATVGTSVA ATIMVNGLSA LFLAFTAGTI TLKSDQIRRQ MVHSGEQPEA RSTLSGVIHL AVLATSFSIL VSLVIGYISL ARFLAFELVW IGMVFSCLYL FSTFITDICE SLFSPHNASG KRMKNSLNLD DRHLAQATLL LSASGKVFLI LMAAVALLNG TFGTTTPLEL VQKAAEIWGG KGLETLSIVP AHLVNAVLFL VVGVYVLRSS KRWLEDEFLP KTTLERGIRA SLVTLFSNIG YILIILLTLA TLGIQWNKLA WIVSALSVGI GFGLQEIVKN FISGLILLTE RPVKVGDSVS ISGVEGDIRR INVRATEIQL GDRSTVIVPN SQFISQNVRN ITMGNPFGVA TLALTFPLDI DPEEVRSLLL DAYINHDAIL ESPAPSVKFS QLTPTGMVLS VTGYVSSPRM VSEAKSDLLF EIIKRLRASN IPLAVPQKMV LENSGVALTD GTSGEDK
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