Gene Pden_4139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4139 
Symbol 
ID4582689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1296172 
End bp1296666 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content71% 
IMG OID639771446 
Productferric uptake regulator family protein 
Protein accessionYP_917899 
Protein GI119386844 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0735] Fe2+/Zn2+ uptake regulation proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0983423 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACTT CGGAATCCCC GCCTGACCCG TTTCACGAGC ACGACCACGC CCATTGCGCG 
GCCGCGGTGC TGCGCCGTGC CGAAGAGCAG GCAAGGACCG AAGGCGTGCG CCTGACCCCG
GTGCGCCGCC GCGCGCTGGA GATCCTGCTG GAATCGCATC GCGCCATGGG CGCCTATGAG
GTGCTGGAGC GGCTTTCGGC CGAAGGCTTC GGCAAGCAGC CCCCGGTGGC CTATCGGGCG
CTGGATTTCC TGGTGGAGCA GGGGCTCGCG CATCGCGTGC AACGCCTGAA CGCCTATGCC
GCCTGCCTTT CGGCCAAGCG CGACCATTCG CCGGCCTTCC TGATCTGCCG CGGCTGCGAG
CAGGTGGCCG AGGCCGAGGC GCCCGAGTTG CGCGCGGCGC TGGACGGGCT GGCCGGGGCG
ACGGGCTTCC GCATCGAGCG TAGCACCGTC GAACTGCTGG GCCTCTGCGC GCGCTGCACC
GAGGCCGGCC TGTGA
 
Protein sequence
MPTSESPPDP FHEHDHAHCA AAVLRRAEEQ ARTEGVRLTP VRRRALEILL ESHRAMGAYE 
VLERLSAEGF GKQPPVAYRA LDFLVEQGLA HRVQRLNAYA ACLSAKRDHS PAFLICRGCE
QVAEAEAPEL RAALDGLAGA TGFRIERSTV ELLGLCARCT EAGL