| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4078 |
|---|
| Symbol | |
|---|
| ID | 4582629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 1233405 |
|---|
| End bp | 1234745 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639771387 |
|---|
| Product | tRNA (uracil-5-)-methyltransferase Gid |
|---|
| Protein accession | YP_917840 |
|---|
| Protein GI | 119386785 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
|---|
| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.335344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.459398 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGA TCCATATCAT CGGCGCGGGT CTTGCCGGAT CCGAGGCCGC CTGGCAGATC
GCCCGCGCCG GCGTGCCGGT GGTGCTGCAC GAGATGCGGC CACAGGTCGC CACCTTCGCC
CATCGCACCG GCGATTGCGC CGAGATGGTC TGCTCGAACA GCTTCCGCTC GGACGACGAC
CGCATGAATG CCGTGGGGCA GCTGCATTGG GAGATGCGGG CGGCGGGCGG GCTGATCATG
GCCATGGCCG ACCGCCATCG CCTGCCCGCC GGCGGCGCGC TGGCGGTCGA CCGCGACGCC
TTCTCGCAGG CCGTGACCCA GGCGCTGCAA GCCGAACCGC TGGTCAGCTT CCAGCCAGGC
GAGATCAGCG ACCTGCCCTC CGAAGGGCAC TGGATCGTCG CCACCGGGCC GCTGACCTCC
GAGGCGCTCG GGAGGTCGAT CCGCAGCCTG ACCGGCGAGG GCTCGCTCGC CTTCTTCGAC
GCCATCGCCC CCATCGTCCA CGCCGAAAGC ATCGACATGT CGATCTGCTG GCGCCAAAGC
CGCTACGACA AGGGCGAGAC CGAGGAAGAG CGCACCGCCT ATATCAACTG CCCGATGACC
CGCGAGGATT ACGAGGGCTT CATCGACGCC CTGCTCGCCG CCGACAAGAC CGAGTTCCAC
GAGGGCGAGA CCGCCGGCTA TTTCGACGGC TGCCTGCCGA TCGAGGTCAT GGCCGAACGC
GGCCGCGAGA CGCTGCGCCA CGGGCCGATG AAACCCGTGG GCCTGACCAA CGCCCATAAC
CCGGCCGAAA AGCCCTATGC CGTGGTGCAG CTGCGTCGCG ACAATGCGCT GGGGACGCTC
TACAATATCG TCGGCTTCCA GACCAAGATG AAATATGGTG CGCAAGTGGA TGTTTTCCGG
CGCATTCCCG GCCTGCAGGA TGCCAGTTTC GCCCGGCTCG GCGGCATCCA CCGCAATACG
TTCCTGAATT CGCCGCGGCT GATCGACGAC CGGCTGCGGT TGCGCGCACG GCCGCATCTG
CGCTTTGCCG GCCAGGTGAC CGGGGTCGAA GGCTATGTCG AATCCGCGGC CATGGGCCTG
CTCGCCGGGC GCATGGCCGC AGCCGAGGCG CTGGGGCGCG ACCTGCCCCC ACCGCCCGCC
ACCACCTCGA TGGGCGCGCT GGTCAGCCAC ATCACCGGCG GCGCCGACGC GAAGACCTTC
CAGCCGATGA ACGTGAATTT CGGCCTCTAC CCGCCTCTGG ACGCGATGCG CGGCGGCCGC
AAGGGGCGCA AGGACCGCTA CCCGGCCTAT ACGGACCGAG CGAAAGCCGA TTTTCAGCAA
TGGGTTGCGG GGGAAAGTTG A
|
|---|
| Protein sequence | MEPIHIIGAG LAGSEAAWQI ARAGVPVVLH EMRPQVATFA HRTGDCAEMV CSNSFRSDDD
RMNAVGQLHW EMRAAGGLIM AMADRHRLPA GGALAVDRDA FSQAVTQALQ AEPLVSFQPG
EISDLPSEGH WIVATGPLTS EALGRSIRSL TGEGSLAFFD AIAPIVHAES IDMSICWRQS
RYDKGETEEE RTAYINCPMT REDYEGFIDA LLAADKTEFH EGETAGYFDG CLPIEVMAER
GRETLRHGPM KPVGLTNAHN PAEKPYAVVQ LRRDNALGTL YNIVGFQTKM KYGAQVDVFR
RIPGLQDASF ARLGGIHRNT FLNSPRLIDD RLRLRARPHL RFAGQVTGVE GYVESAAMGL
LAGRMAAAEA LGRDLPPPPA TTSMGALVSH ITGGADAKTF QPMNVNFGLY PPLDAMRGGR
KGRKDRYPAY TDRAKADFQQ WVAGES
|
|---|
| |