Gene Pden_3930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3930 
Symbol 
ID4582481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1066719 
End bp1067429 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content67% 
IMG OID639771239 
ProductABC transporter related 
Protein accessionYP_917692 
Protein GI119386637 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGGC CCTATCTTTC CGCCACCGCC ATGCGCGGCG GCTATGGCAA GGCCGACATC 
CTGAACGGCT GCACCCTGAC GGTCGAGCGT GGCCAGATCG CCGTGATCGT CGGCCCGAAC
GGCGCCGGCA AGTCCACGGC GATGAAGGCC GTCTTCGGCA TGCTGCACCT GCGCGAAGGC
CAGGTGGCGC TGGCGGGCGA GGACATCACC CATCTCAGCC CGCAGGAGCG GGTGCGCAAG
GGCATGGGCT TCGTGCCGCA GACCCACAAC ATCTTCCCGA CCATGACGGT CGAGGAAAAC
CTGGAAATGG GCGCCTTCAT CCGCGAGGAC GACTACCGCG ACACCATGGC CCAGGTCTAT
GAACTGTTCC CCGCCGTGGC CGACAAGCGC AAGCAGAACG CCGGCGAGCT CTCGGGCGGC
CAGCGCCAGC AGGTCGCCGT CGGCCGGGCG CTGATGACCA AGCCCAGCCT CTTGATGCTG
GACGAGCCGA CCGCCGGGGT CAGCCCCATC GTCATGGACG AGCTTTTCGA CCGCATCATC
GAGGTCGCCC GCACCGGGAT TTCCATCCTG ATGGTCGAGC AGAACGCCCG GCAGGCGCTG
GAGATCGCCG ATATCGGCTA TGTCCTGGTG CAGGGCGCCA ACCGTTACAC CGACAGCGGG
CAGGCGTTGC TGGCCGATCC CGAAGTCCGC CGCACCTTCC TGGGGGGCTG A
 
Protein sequence
MAGPYLSATA MRGGYGKADI LNGCTLTVER GQIAVIVGPN GAGKSTAMKA VFGMLHLREG 
QVALAGEDIT HLSPQERVRK GMGFVPQTHN IFPTMTVEEN LEMGAFIRED DYRDTMAQVY
ELFPAVADKR KQNAGELSGG QRQQVAVGRA LMTKPSLLML DEPTAGVSPI VMDELFDRII
EVARTGISIL MVEQNARQAL EIADIGYVLV QGANRYTDSG QALLADPEVR RTFLGG