| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3786 |
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| Symbol | rpsA |
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| ID | 4582337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 921809 |
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| End bp | 923524 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639771095 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_917548 |
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| Protein GI | 119386493 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0376726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000327486 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGGAA ATGATCGAAA AGGAAACTGG ATCTATATGT GCGCTAAAGC GACCATGGAG
GAATTCGAGG CCCTCCTGAA CGAAAGCCTC GCCATCGACA CGCCCGAAGA GGGTTCTGTC
GTCAAGGGCA AGGTCATCGC CATCGAGGCG GGCCAGGCCA TCATCGATGT CGGCTACAAG
ATGGAAGGCC GCGTCGATCT CAAGGAATTC GCAAATCCCG GCGAAGCCCC CGCCATCGCC
ATCGGCGATG AGGTCGAGGT CTATCTCGAC CGCGTCGAGA ACGCCCGTGG CGAAGCCTCG
ATCTCGCGCG AGAAAGCCCG CCGCGAAGAG GCCTGGGACC GCCTGGAGAA AGCCTATGCC
GCGGAAGAGC GCGTCGAAGG CGCCATCTTC GGCCGCGTCA AGGGCGGCTT CACCGTCGAT
CTGGGCGGTG CCGTGGCCTT CCTGCCCGGT TCGCAGGTCG ATGTGCGCCC CGTGCGCGAC
GCCGGCCCGC TGATGGGCCT GAAGCAGCCC TTCCAGATCC TCAAGATGGA TCGCCGCCGC
GGCAATATCG TCGTGTCGCG CCGCGCCATC CTGGAAGAGA GCCGCGCCGA GCAGCGCGCC
GAGGTCATCG CCAACCTGTC GGAAGGTCAG ACCGTCGAGG GCGTGGTCAA GAACATCACC
GAATACGGCG CCTTCGTCGA TCTGGGCGGT GTTGACGGCC TGCTGCACGT CACCGACATG
GCCTGGCGCC GCGTCAACCA CCCGTCCGAG ATCCTGTCGA TCGGCGAGAC CGTCAAGGTC
CAGGTCGTCA AGATCAACAA GGACACCCAC CGCATCAGCC TGGGCATGAA GCAGCTTCAG
GCCGATCCGT GGGATACCGT GGGCAGCAAG TTCCCGATCG GCTCGGTCCA TACCGGCCGC
GTGACCAACA TCACCGACTA CGGCGCCTTC GTCGAACTGG AAGCCGGTGT CGAGGGTCTG
GTCCACGTCT CGGAAATGAG CTGGACCAAG AAGAACGTCC ACCCCGGCAA GATCGTCTCG
ACCTCGCAGG AAGTCGACGT CATGGTGCTG GAGATCGACG AAGCCAAGCG CCGCGTCTCG
CTGGGTCTCA AGCAGACCAT GCGCAACCCG TGGGAAGTCT TTGCCGAGAC CCATCCGGTC
GGCACCGTCA TCGAGGGCGA AGTCAAGAAC ATCACCGAAT TCGGTCTGTT CGTCGGCCTG
GAAGGCGATA TCGACGGCAT GGTCCACCTG TCGGACATCT CGTGGGATAC CCGCGGCGAG
GAAGCCATCC AGGACTTCCG CAAGGGCGAT GTGGTGAAAG CCGTCGTCCA GGAAGTCGAC
ATCGAGAAAG AGCGCATCTC GCTCTCGATC AAGGCGCTTG AGAACGACGC GATGGCCGAG
GCCGTCGAGG GCATCAAGCG CGGCTCGGTC ATCACCGTCA CCGTGACGGC GATCGAGGAT
GGCGGCATCG AGGTCGAATA CAACGGCATG AAGTCCTTCA TCCGCCGTTC GGACCTGGCC
CGCGACCGTC AGGACCAGCG CCCCGAGCGC TTCCAGGTCG GGGATCACGT CGATGTCCGC
GTCACCAACA TCGACACCAA GACCCGCCGT CTGGGCCTGT CGATCAAGGC GCGCGAAATC
GCCGAAGAAA AAGAGGCCGT CGAACAGTAT GGCAGCTCGG ATTCGGGTGC CTCGCTGGGC
GACATCCTGG GCGCTGCGCT CAAAGGCCGC AACTGA
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| Protein sequence | MAGNDRKGNW IYMCAKATME EFEALLNESL AIDTPEEGSV VKGKVIAIEA GQAIIDVGYK
MEGRVDLKEF ANPGEAPAIA IGDEVEVYLD RVENARGEAS ISREKARREE AWDRLEKAYA
AEERVEGAIF GRVKGGFTVD LGGAVAFLPG SQVDVRPVRD AGPLMGLKQP FQILKMDRRR
GNIVVSRRAI LEESRAEQRA EVIANLSEGQ TVEGVVKNIT EYGAFVDLGG VDGLLHVTDM
AWRRVNHPSE ILSIGETVKV QVVKINKDTH RISLGMKQLQ ADPWDTVGSK FPIGSVHTGR
VTNITDYGAF VELEAGVEGL VHVSEMSWTK KNVHPGKIVS TSQEVDVMVL EIDEAKRRVS
LGLKQTMRNP WEVFAETHPV GTVIEGEVKN ITEFGLFVGL EGDIDGMVHL SDISWDTRGE
EAIQDFRKGD VVKAVVQEVD IEKERISLSI KALENDAMAE AVEGIKRGSV ITVTVTAIED
GGIEVEYNGM KSFIRRSDLA RDRQDQRPER FQVGDHVDVR VTNIDTKTRR LGLSIKAREI
AEEKEAVEQY GSSDSGASLG DILGAALKGR N
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