| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3275 |
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| Symbol | |
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| ID | 4581836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 441327 |
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| End bp | 443006 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639770596 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_917049 |
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| Protein GI | 119385994 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000365661 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGGGC CGCGCACTGC CGCCCGCATC CTCGTCGACC AGCTGTTGCT GCAAGGTGTG
GACCGCGTCT TCTGCGTGCC GGGCGAAAGC TTCCTCGCCG TTCTCGACGC GCTGCATGAC
TGCCCCCAGA TCGAATTGGT GACCTGTCGG CACGAGGGCG GGGCCGCCAT GATGGCCGAG
GCCTATGGCA AGCTGACCGG CCGGCCGGGC GTCGTCTTCT GCTCGCGCGG CCCCGGGGCA
ACCAATGCCT CCTCGGGGCT TCATGTCGCC TTTCAGGACA GCACGCCGAT GATCCTGTTC
ATCGGCCAGA ACCCGCGTGA CGTGATGACC CGCGAGGGGT TTCAGGAGAT CGACTACCGC
TGCACTTTCG GCACGCAGGC CAAGGCTGTG CTGCAGCTCG AGGACGCCGC ACGGACCGCG
GAATTCGTCA CCCGCGCCTT TCAGCTGGCC ATGTCCGGCC GTCCCGGTCC CGTGGTCATT
CCCCTGCCGG AGGACGTGCT GACCGAAATC GCCGAATGCG CCGATGGCCG CCCTGCGGCG
CGCTTTGCGA ATGAGCCCTC GCCGGAGGCC GTGTCGGCGG TGCGGGCATT GCTGACCGAG
GCGCGCCGTC CGGTCGTGAT GCTGGGCGGC TCCGGCTGGA CCGGCGAGGC GGTCGCCGCC
TTCCGTCGCT TTGCCGAGGA CAGCGGGCTG CCCGTCACCG CCTCGTTCCG GCGGCAGGAC
CTCCTCGACA ATGACAGCAG CAGCTATATC GGGGAACTCG GCCTCGGCCC CAATCCCAGG
CTTGTGCAGA TGGTGGCGGA GGCGGATCTG ATCCTCGTCA TCGGGGCGCG GTTGGGCGAG
ATCGGAACCA ATGGCTACAC GATCATGGAC ATTCCCTGTC CCCGGCAGCG GTTGATCCAT
GTCTATCCCG GTCCTGATGA GATCGGCCAT GTCTATCGAC CCGAACTGGG CATCGTCAGC
GATCCGGCAA GCTTTGCCCT GGCGCTCGCC GCGGGCGGTG CTGTCCGCGG TGATTGGGAC
GACTGGCGCA AGGCCGCACG CGCGGATTTC GAGGCATGGA CCGCCCCTCG GACCAGCCCC
GGCGCGATCC AGATGTGCGA GATCATGGCC TGGCTTGATG AGAGCCTGCC GGAGGACACG
ATCTACACCA ACGGCGCAGG GAATTTTACC GTCTGGCTGC ACCGCTTTCA CCGCTATCGC
CGCTTTGGCA CGCAGGTCGC GCCGATCTGC GGCTCGATGG GCTACGGCAT TCCGGCAGCC
TTGGCCGCCA AGTTCGCCCG GCCAGAAGCC TCTGTTATTT GCATCGCAGG GGACGGCGAT
TTCCAGATGA CCTGCACCGA GTTGGCGACG GCGGCGGCGC ATGGGCTGAA AATCCGTATC
CTGATCCTGA ACAACGGGAT GCTCGGCACG ATCCGCATGC ATCAGGAGCG GCATTATCCC
GCCCGGGTCT CGGGAACCGA TCTCGCGCGC GGAAATCCCG ATTTCACCGC ATTGGCGCGG
TCCTATGGCG CCCATGCCGA AAGGGTCGAG CGGACCACGG ATTTCGCCGC AGCCTTCGCG
CGCGCCGACA CCCATGACGG GCCCGCGGTC ATCGAAATCA TGATCGATCC CGAGGCTCTG
ACGCCCGGCG CCTCGCTCAG CCAGATCAGG CAGGCGGCGC TGCAGACGCT GCCGGGCTAA
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| Protein sequence | MKGPRTAARI LVDQLLLQGV DRVFCVPGES FLAVLDALHD CPQIELVTCR HEGGAAMMAE
AYGKLTGRPG VVFCSRGPGA TNASSGLHVA FQDSTPMILF IGQNPRDVMT REGFQEIDYR
CTFGTQAKAV LQLEDAARTA EFVTRAFQLA MSGRPGPVVI PLPEDVLTEI AECADGRPAA
RFANEPSPEA VSAVRALLTE ARRPVVMLGG SGWTGEAVAA FRRFAEDSGL PVTASFRRQD
LLDNDSSSYI GELGLGPNPR LVQMVAEADL ILVIGARLGE IGTNGYTIMD IPCPRQRLIH
VYPGPDEIGH VYRPELGIVS DPASFALALA AGGAVRGDWD DWRKAARADF EAWTAPRTSP
GAIQMCEIMA WLDESLPEDT IYTNGAGNFT VWLHRFHRYR RFGTQVAPIC GSMGYGIPAA
LAAKFARPEA SVICIAGDGD FQMTCTELAT AAAHGLKIRI LILNNGMLGT IRMHQERHYP
ARVSGTDLAR GNPDFTALAR SYGAHAERVE RTTDFAAAFA RADTHDGPAV IEIMIDPEAL
TPGASLSQIR QAALQTLPG
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