| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2942 |
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| Symbol | |
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| ID | 4581509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 106488 |
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| End bp | 109613 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639770269 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_916722 |
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| Protein GI | 119385667 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.730254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGGT TCTTCATTCA CCGGCCGGTG CTGGCCTGGG TGATCTCGAT CTTCATCGTC
ATCGCCGGGG TGCTGGCGCT GCCGATGATG CCCATCGCGC AATATCCGCA GGTGGCCTGG
CCGCAGATCA CCATCTCGAC CGCCTATACC GGCGCCGCGC CGGGAGAGAT CAACCAGGCC
GTCGCCCAGC CCATCGAGGA CGAGTTGAAC GGCGTCGAGG GGCTGGCCTA TTACGAATCC
GTCTCGGACA GTTCGGGGGC CATGTCGATC ACGGCGACCT TCGAGCCGGG CACCGACATC
GCCCGCGCCC AGGTGGACGT GCAGAACGCC GTGGCGCGGG TCGAACCGCT CTTGCCGCAA
AGCGTGGTCG ACCAGGGCGT GCTGATCGAA GAGGCGGGCA CGGGCTTCCT GATGATGGTC
GCGCTGACCT CGGACGACGG GGCGATGGAC GACATCGCGC TGGGCGATTA CCTGAACCGC
AACGTGGCGG GCGAGATCCG CCGCATCGAG GGCGTGGGCC GGGCGCAGGT CTTTGCCCCG
GAACGGGCGC TGCGGATCTG GGTCGATCCG GCCAAGATGA CCGGGCTGAA CCTCAGCTCG
GCCGAGATCG TCGCGGCGGT GCGGGCGCAG AACGCGCAGG TCGCGGCGGG CAAGGTCGGC
GCCGACCCGA ACCCCATCGG CCAGCAGCTG ACCGCGACCG TGCTGATCAA GGGGCAGCTC
GACGATGTCG AGGAGTTCGG CAAGATCGTG CTGCGCGCCA ATCCCGACGG CTCGACCGTG
CTGCTCCGCG ACGTGGCCCG GCTGGAGGTG GGCGCGGAAA GCTACAGCTT CGCCTCGCGC
ATCAACGGCA AGCCGGCGGC GGCGCTGGGC ATCCAGCTTT CGGCCGCCGG CAATGCGCTG
AGCACCTCCG AGGCGGTGCA CCAGAAGATG GAGGAGCTGT CGCGGTTCTT CCCCGACGGC
GTCAGCCATA CCATCCCCTA TGACACCACC CCCTTCGTCG AGGCGTCGAT CGAGAAGGTG
CTGCACACGC TGCTGGAGGC GGTGGCGCTG GTCTTTGTGG TGATGTTCCT GTTTTTGCAG
AATTTCCGCT ATACCATCAT CCCGACCATC GTGGTGCCCA TCGCGCTGAC GGGGACGGTG
GCGGTCATGC TGGCGGCGGG GTTCTCGATC AACGTGCTGA CCATGTTCGC CATGGTGCTG
GCCATCGGCA TCCTGGTCGA CGACGCCATC GTGGTGATCG AGAACGTCGA GCGCATCATG
GCGACCGAGG GGCTGCCCCC GCGCGAGGCG ACGGAAAAGG CCATGGGCCA GATCTCGGGC
GCCATCGTCG GCATTACGCT GGTCCTGGCG GCGGTCTTTG TGCCGATGGC CTTCTTTCCC
GGCTCGTCGG GCATCATCTA TCGCCAGTTC GCGCTGACCA TGGTGGTGTC GATCCTGTTC
TCGGCCTTCC TGGCGCTGAC GCTGACCCCG GCGCTTTGCG CGACCTTCCT GAAGCCGATC
AGCGGCCATC ACGAAAGGAA GGGCTTCTTC GGCTGGTTCA ACCGCAATTT CGACCGGCTG
ACCGAGCGTT ACACCAGCGC GGTCGGGCTG GTCACGCGGC GGCGGCTGGT GATGATGGCG
TTCTATCTGG TGCTGGTCGG CGCGACGGCC ATGGGCTTCC TGCGCCTGCC GACCAGTTTC
CTGCCGAACG AGGACCAGGG CTTCATCATC GCCGACATCC AGACCCCTGC CACGGCGAGT
TCCAACCGCA CGGACGAGGT GCTGGGCCAG GCCACGCAGA TGTTCCAGCG CAGCGATGCG
GTCGAGAATA CCGTGGCGAT CCGCGGCTTC AGCTTTTCGG GGCAGGGGCC GAACGCGGGG
CTGATGTTCG TCACCTTCAA GGACTGGGCC GAGCGCGAGC AATCGGCGCA GGACATCGCC
AATGCCGCGA ACATGGAGAT GTTCGGCTAT CAGGACGCGC AGGCCTTTGC GCTGTCGCCG
CCGCCGATCC CCGGCTTCGG CGCCACCGGC GGCTTCAGCT TCCGCTTGCA GGACCGCGGC
GGGCAGGGGC AGGAGGCGCT GCTGGCAGCC GCCCAGCAGA TCATCGCCAA GGCGCAGGAA
AACGGCATCG CCACCGGGCT GCGCATCGAG GGGCTGCCCT CGGCCGCGCA GGTCTTCGTC
ACCATCGACC GCGAAAAGGC CAATGCCTTC GGCGTGACCT TCGCCGACAT TTCGGCGACG
ATCTCGCAAT ACCTGGGCTC GGCCTATATC AACGACTTCC CCAATGCCGG GAAGATGCAG
CGCGTGGTCA TGCAGGCCGA GGACGACAGT CGCATGCAGG CCGAGGACAT CCTGGCGCTG
ACCGTGCGCA ACGCGGGTGG CGGGATGGTG CCGTTTTCCT CGTTCGCCAG CGTGGCATGG
GAGCAGGGGC CGTCGCAGGT CGTGGGCTAT AACGGCTATC CCGCGATCCG CATCGCCGGC
GCCGCCGGTC CGGGCTACAG CTCGGGCGCA GCCATGGCCG AGATGGAGCG GCTGGCGGCC
GAGCTGCCGC CGGGCTTCGG CTATGAATGG ACCGGGCAGT CGCTGGAGGA GATCCAGGCC
GGGTCGCAGG CGACGCTGCT TTACGCGATG AGCATCCTGT TCGTCTTCCT GCTGCTTTCG
GGGCTTTACG AAAGCTGGTC GATCCCGCTT TCGGTGATGC TGGTGGTGCC GCTGGGCGTC
CTGGGCTGCG TCGTCGCCGT CATGCTGCGC GACATGCCCA ACGACATCTA TTTCAAGGTG
GGGCTGATCG CGATCATCGG GCTTTCCGCC AAGAACGCCA TCCTGATCGT CGAGTTCGCC
AAGGACCTGC GCGAGCAGGG GCAAAGCCTG ATCGACGCGG CGGTGACGGC GGCGAAGCTG
CGCTTTCGCC CGATCCTGAT GACCTCGCTG GCCTTCACGC TGGGCGTGGT GCCGCTGGCC
ATCGCCACCG GCCCCTCGGC GGCCAGCCAG AACGCCATCG GCACCGGGGT GATCGGCGGC
ATGGTCGCGG CCACGGTGCT GGCGGTGTTC TTCGTGCCGG TGTTCTTCGT CTTCGTGCTG
GGCGGGGTCA GCCGGCTGAC CGGCGGCAGG ACGGCGGCCG GGCCGCAGGC CGATACGGCG
GGCTAG
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| Protein sequence | MARFFIHRPV LAWVISIFIV IAGVLALPMM PIAQYPQVAW PQITISTAYT GAAPGEINQA
VAQPIEDELN GVEGLAYYES VSDSSGAMSI TATFEPGTDI ARAQVDVQNA VARVEPLLPQ
SVVDQGVLIE EAGTGFLMMV ALTSDDGAMD DIALGDYLNR NVAGEIRRIE GVGRAQVFAP
ERALRIWVDP AKMTGLNLSS AEIVAAVRAQ NAQVAAGKVG ADPNPIGQQL TATVLIKGQL
DDVEEFGKIV LRANPDGSTV LLRDVARLEV GAESYSFASR INGKPAAALG IQLSAAGNAL
STSEAVHQKM EELSRFFPDG VSHTIPYDTT PFVEASIEKV LHTLLEAVAL VFVVMFLFLQ
NFRYTIIPTI VVPIALTGTV AVMLAAGFSI NVLTMFAMVL AIGILVDDAI VVIENVERIM
ATEGLPPREA TEKAMGQISG AIVGITLVLA AVFVPMAFFP GSSGIIYRQF ALTMVVSILF
SAFLALTLTP ALCATFLKPI SGHHERKGFF GWFNRNFDRL TERYTSAVGL VTRRRLVMMA
FYLVLVGATA MGFLRLPTSF LPNEDQGFII ADIQTPATAS SNRTDEVLGQ ATQMFQRSDA
VENTVAIRGF SFSGQGPNAG LMFVTFKDWA EREQSAQDIA NAANMEMFGY QDAQAFALSP
PPIPGFGATG GFSFRLQDRG GQGQEALLAA AQQIIAKAQE NGIATGLRIE GLPSAAQVFV
TIDREKANAF GVTFADISAT ISQYLGSAYI NDFPNAGKMQ RVVMQAEDDS RMQAEDILAL
TVRNAGGGMV PFSSFASVAW EQGPSQVVGY NGYPAIRIAG AAGPGYSSGA AMAEMERLAA
ELPPGFGYEW TGQSLEEIQA GSQATLLYAM SILFVFLLLS GLYESWSIPL SVMLVVPLGV
LGCVVAVMLR DMPNDIYFKV GLIAIIGLSA KNAILIVEFA KDLREQGQSL IDAAVTAAKL
RFRPILMTSL AFTLGVVPLA IATGPSAASQ NAIGTGVIGG MVAATVLAVF FVPVFFVFVL
GGVSRLTGGR TAAGPQADTA G
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