| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1762 |
|---|
| Symbol | dnaE |
|---|
| ID | 4580926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1748469 |
|---|
| End bp | 1751939 |
|---|
| Gene Length | 3471 bp |
|---|
| Protein Length | 1156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639769077 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_915555 |
|---|
| Protein GI | 119384499 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.402462 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.434108 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGAAA ATTCTCCCCG ATTCATCCAC CTGCGCACAC ATTCCGAACA TTCGCTGCTG
GAAGGCGCGG TGCCGGTCAA GAAACTCGCC GATCTTGCGG CGCAGAACGG CATGCCCGCC
GTGGCGCTGA CCGACAGCAA CGCCCTGTTC GCGGCGCTGG AATTCTCGGT CAAGGCGCAG
GATGCGGGCG TGCAGCCGAT CATCGGCTGC CAGGTGACGC TTGCTGCCGA GGCGACCGGC
CCCGTCGTGC TCTTGGCGCA GAACGAGGCG GGCTGGCTGA ACCTGATGGA GCTTTCCACC
TGCCTCTACC TGCGCGACGA CCATGCCTTG CCGCATGTGA CGCCCGAGGA ACTCGCGGCC
CATGCCGAGG GGCTGATCTG CCTGACCGGC GGCGCCGGCG GCCCGCTGGG GCAACTGGTG
CTGCAAGGCC GACAGGCCGA GGCGCGCGCG CTGGCCGAGC GGCTGGCGGC CGCCTTCCCG
ACACGGCTTT ACGTCGAGTT GCAGCGCCAT CACGATGCCG AGGGCCAGCC GGTTCCCGAG
GAGACAGGGT CCGAAGGCGG CATGATCGAC ATCGCCTATG CGCTCGACCT GCCGCTGGTC
GCCACCAACG ACGTCTATTT CCCCAAGCCC GAGCTGTTCG ACGCGCATGA CGCGCTGATC
TGCATTTCCG AACGCGCCTA TGTCGACCAG ACCGCGCCGC GCCGCCGGCT GACGCCGCAG
CACTACTTCA AGTCCGCCGC CGAGATGGCG ACGCTGTTCG CCGATCTGCC CGAGGCGATC
CGAAACACCG TCGAGATCGC CCGCCGCTGC GCCTTTGCCG TCAAGAAGCA CAAGCCCATC
CTGCCGCGCT TTGCAGATGA CGAGGTCGAG GAACTGCGCC GCCAGGCCTG GGATGGCTTG
CGCGCCCGGC TGGCGGTGAT CCCGCATTCC GCGACGGTCG AGGAATACGA GGAGCGGCTG
CGCTTCGAAC TGGGCATCAT CGAGCAGATG GGCTTTCCCG GCTATTTCCT GATCGTCGCC
GATTTCATCA AATGGGCCAA GGAACATAAC ATCCCGGTCG GGCCGGGCCG GGGCTCGGGC
GCGGGCTCGC TGGTCGCCTA TGCATTGACG ATTACCGACC TGGATCCAAT CCGTTACAGC
CTGCTCTTCG AGCGGTTTCT GAACCCCGAG CGGGTCTCGA TGCCCGACTT CGACATCGAC
TTCTGCATGG ATCGCCGCGA GGAGGTGATC CAATATGTGC AAGAGAAATA CGGCCGCGAC
AAGGTGGGCC AGATCATCAC CTTCGGCGCG CTCTTGTCCA AGGCCGCGGT GCGCGACGTG
GGCCGGGTGC TGCAGCTGCC CTTTGGCCAG GTGGACCGGC TCAGCAAGAT GATCCCGGTC
GAGGGCGTCA AGCCCGTCAG CGTCACCAAG GCGCTGGCCG ACGAGCCGCG CCTGCGCGAG
GCGGCCAGGG AAGAGGTGGT GAACCGCCTG CTGGACTATG CCGCCAAGAT CGAGGGGCTC
TTGCGCAATG CCTCGACCCA TGCCGCCGGC GTGGTGATCG GCGACCGGCC GCTGCACCGG
CTGGTGCCGC TTTACCGCGA CCCGGCATCG GACATGCCGG CGACGCAGTT CAACATGAAA
TGGGTCGAGC AGGCGGGGCT GGTCAAGTTC GACTTCCTGG GCCTGAAAAC CCTGACGGTG
ATCCAGAACG CGGTGGACCT GATCAACGAC GGCGGCCGGC CGCTGCATGT CGCGGCAGAC
GGGCGCCAGC TTTACGAGCC CGCCAAGGGG GCCGAGAACC AGATCAACGC CATCCCGCTG
GACGACAAGC CCAGCTACGA TCTTTTCGCC AGCGCCCGCA CGGTCGCGGT GTTCCAGGTC
GAAAGCTCGG GCATGATGGA CGCGCTGCGG CGCATGAAGC CGACCTGCAT CGAGGACATC
GTGGCGCTGG TGGCGCTGTA TCGTCCCGGC CCGATGGAGA ACATCCCGAC CTATTGCGAG
GTGAAGAACG GTCTGCGACC CCTTGAATCC ATTCACCCTT CGATCGACGA CATCCTGGCC
GAGACGCAGG GCATCATCGT CTATCAGGAA CAGGTGATGC AGATCGCGCA GGTCATGGCC
GGCTATTCGC TGGGCGGCGC CGACCTGCTG CGCCGCGCCA TGGGCAAGAA GATCGCCGAG
GAGATGGCCA AGGAACGGCC GAAATTCGTC GAGGGTTGCA AGGCGCAGGG AATCGACACG
AAGAAGGCCG GAGAGGTCTT TGACCTTCTT GAAAAATTCG CCAATTACGG CTTCAACAAA
TCGCATGCGG CAGCCTATGC CGTGGTCAGC TACCAGACCG CCTGGCTGAA GGCCAATCAC
CCGGTCGAGT TCATGGCCGC GGTGATGAAC TGCGATATCC ACCTGACCGA CAAGCTGGCC
GTTTACAAGC GCGAGGCCGA CCGGATGGGG ATCGAGACGG TGCCGCCTTG CGTGAACCGC
TCGGAGGCCC TGTTCAGCGT CAAGGACGGC AAGATCCTCT ATGCGCTCGG CGCGCTCAAG
GGCGTGGGCG TCGAGGCGAT GAACCTGATC GTGCAGGCGC GCGCCGGGCG TCCCTTTGCC
GACATGCACG ACTTCGCCCG CCGCGTGGAC ATGCGCCGGG TCGGCAAGCG GCCGCTGGAG
ATGCTGGCCC GCGCCGGCGC CTTCGACGCG CTGGAGCCGA ACCGGGCGCG GGTGCTGAAA
TCGCTGGACG GGCTGGTGGC CTGGTCCACG GCGGTGCAGG AGGCGGCGGC CTCCAGCCAG
TCCTCGCTGT TCGGCGGGGG CGAGGATCTG CCGCCGCCGC GTCCGGTCGC CGCGCCCGTC
TGGATGCCGG CCGAGAAGCT GGCCGAGGAA CATGCGGCGG TCGGCTTCTA CCTTTCGGGC
CATCCGCTGG ACGACTATCA GCCGGCGCTG CGCCGCAAGG GGGTGCAGAC GCTCGCCGAG
GTGACGCAGG CGGCGGCCGA CGGGGCGCTG GTGGCGCAGC TTGCCGGCAC GGTTGCGCAT
CGCCAGGAAA AGAAATCTGC GCGCGGCACC CGCTTTGCCT TTGTCGGCCT GTCCGATCCG
ACCGGGCTTT ACGAGGTCAC GGTGTTCTCG GACACGCTGG ACGCCCATCG CCAGCATCTG
GAGCCGGGTG CGAACGTGGT CTTGCAGGTG CAGGTCGAAC CTTCGGGCGA TCAGGTCAAG
CTGCTGGCGC GCTCGGTCAT GCCGCTGGAT CAGGCGGTGG CCGATGCCGG GGCGAACCGC
CTGGCGGTCG AGATCGCCGG GCTGGACGCC GTGCCCGGCA TCGCCGAGGC GCTGGCCCGC
ATCCAGGCCG AGCTCAACGC CCCCGCTCGC GCCCGCGGTC CCATCTCGCT GCGGCTGAAG
GACGGCGCCG ATCTGGTCGA TATCGAGATC GCCGAGGACG CGCCCCTGAC CACCCCCGCC
CGCCAGGCGC TGCGCGTCGT CCCGGGGGTG CTGGAGGTGG TCGAGGAGTA G
|
|---|
| Protein sequence | MPENSPRFIH LRTHSEHSLL EGAVPVKKLA DLAAQNGMPA VALTDSNALF AALEFSVKAQ
DAGVQPIIGC QVTLAAEATG PVVLLAQNEA GWLNLMELST CLYLRDDHAL PHVTPEELAA
HAEGLICLTG GAGGPLGQLV LQGRQAEARA LAERLAAAFP TRLYVELQRH HDAEGQPVPE
ETGSEGGMID IAYALDLPLV ATNDVYFPKP ELFDAHDALI CISERAYVDQ TAPRRRLTPQ
HYFKSAAEMA TLFADLPEAI RNTVEIARRC AFAVKKHKPI LPRFADDEVE ELRRQAWDGL
RARLAVIPHS ATVEEYEERL RFELGIIEQM GFPGYFLIVA DFIKWAKEHN IPVGPGRGSG
AGSLVAYALT ITDLDPIRYS LLFERFLNPE RVSMPDFDID FCMDRREEVI QYVQEKYGRD
KVGQIITFGA LLSKAAVRDV GRVLQLPFGQ VDRLSKMIPV EGVKPVSVTK ALADEPRLRE
AAREEVVNRL LDYAAKIEGL LRNASTHAAG VVIGDRPLHR LVPLYRDPAS DMPATQFNMK
WVEQAGLVKF DFLGLKTLTV IQNAVDLIND GGRPLHVAAD GRQLYEPAKG AENQINAIPL
DDKPSYDLFA SARTVAVFQV ESSGMMDALR RMKPTCIEDI VALVALYRPG PMENIPTYCE
VKNGLRPLES IHPSIDDILA ETQGIIVYQE QVMQIAQVMA GYSLGGADLL RRAMGKKIAE
EMAKERPKFV EGCKAQGIDT KKAGEVFDLL EKFANYGFNK SHAAAYAVVS YQTAWLKANH
PVEFMAAVMN CDIHLTDKLA VYKREADRMG IETVPPCVNR SEALFSVKDG KILYALGALK
GVGVEAMNLI VQARAGRPFA DMHDFARRVD MRRVGKRPLE MLARAGAFDA LEPNRARVLK
SLDGLVAWST AVQEAAASSQ SSLFGGGEDL PPPRPVAAPV WMPAEKLAEE HAAVGFYLSG
HPLDDYQPAL RRKGVQTLAE VTQAAADGAL VAQLAGTVAH RQEKKSARGT RFAFVGLSDP
TGLYEVTVFS DTLDAHRQHL EPGANVVLQV QVEPSGDQVK LLARSVMPLD QAVADAGANR
LAVEIAGLDA VPGIAEALAR IQAELNAPAR ARGPISLRLK DGADLVDIEI AEDAPLTTPA
RQALRVVPGV LEVVEE
|
|---|
| |