| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1564 |
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| Symbol | |
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| ID | 4580866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1537598 |
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| End bp | 1539490 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639768880 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_915360 |
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| Protein GI | 119384304 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.668446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0251028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGTCT TCATCGCGCA GAACATGGCG CCGATCATGT TCGCCTCGCT GGTGCTGTTT
CTGCTCTTCG GCTATCCGGT CGCCTTCGCG CTGGCCGCGA ACGGGCTGTT GTTCTTCGTC
ATCGGCGTCG AGCTTGCGCC GCTTTCGGGC GGCAACATCA ACCTCAGCTG GCCATTGCTG
AACGCCATGC CCGAACGGTT ATGGGGGGTG ATGTCGAACG AGACATTGCT GGCCATTCCA
TTCTTCACCT TCATGGGCAT CGTGCTGGAG AAATCCGGCA TGGCCGAGGA TCTGCTGGAC
ACGGTGGGCC AGCTTTTCGG CCCGATCCGC GGCGGCCTGG CCTATGCGGT TATCATCGTC
GGCGCGCTGC TGGCGGCGAC GACCGGCGTG GTCGCGGCCT CGGTCATCGC CATGGGCCTG
ATCTCGCTGC CGATCATGCT GCGCTATGGC TATGACCGGC GCATCGCCTC GGGGACCATC
GCGGCCTCGG GGACGCTGGC GCAGATCATC CCGCCCTCGC TGGTGCTGAT CGTGCTGGCC
GACCAGCTCG GCCGTTCGGT GGGCGACATG TACAAGGGCG CGCTGATCCC CGGCCTGGTG
CTGACCGGGA TGTACATGGT CTACATCTTC GTCATGTCGA TCATCCGGCC GAACAGCCTG
CCGGCCTTGC CGAAAGAGGC GCGGACGCTG GGCTCGGGCG TGACCTCGCT TTTCGTGGCG
TTGGCGCTGA CCGTCGGCAT GGCTTGGCTG GCGTTCCGCT GGCTCTATCC GACGCATGGG
CGGGATGCCG ACATCCTGGC CCCGGCGCTG GCGGTGATCG TGATCTATGT CGCCGCGCTG
CTGGACCGGG CGCTGAAGAT CAACGTGATG TCGCGGCTGG CACAACAGGT CGTCATCGTG
CTGATCCCGC CGCTGGCGCT GATCTTCCTG GTGCTGGGCA CGATCTTCCT GGGCATCGCC
ACCCCGACCG AGGGCGGCGC CATGGGCGCT GTCGGCGCGC TGCTGCTGGC CGGGGTCAAG
AACCGGCTCA GCTATGACGT GATCCGGCAG GCGCTGCTGG CCACGACGCG GCTGTCGGCC
TTTGTCATGT TCATCCTGAT CGGGGCGCGG GTGTTCTCGC TGACCTTCTA CGGCGTGAAC
GGGCATATCT GGGTCGAGCA TCTGCTGACC TCGCTGCCCG GCGGCGAATA CGGTTTCCTG
ATCGCGGTCT CGGTGCTGGT CTTCCTGCTG GCCTTCTTTC TCGACTTCTT CGAGCTGGCC
TTCATCATCG TGCCGCTGCT GGCACCGGCG GCCGAGGCGA TGGGCATCGA CCTGATCTGG
TTCGGCGTGC TTCTGGGCGT GAACATGCAG ACCAGCTTCA TGCACCCGCC CTTCGGGTTC
TCGCTGTTCT TCCTGCGCTC GGTGGCGCCG AAATCGCCTT ATGTCGACAA GGTGACCGGC
CAGACCATGC AGCCGGTGAC CACCGGGCAG ATCTATTGGG GCGCGGTGCC CTATGTCTGC
ATCCAGCTGG TGATGGTGGC CGTCGTCATG ACCTTCCCCG GGCTGGTCAT GCATTACAAG
GGCGCGCCCA TCGACACCTC GAACGTCCGC TTCGAGATCC CCTCGGGCGG TGGCTTGGGT
GGCTTGGGCG GTCTTGGCGG GCTGGGCGAT CCCTTCGGCC AGCCGGCTGC GCCGGGAACC
GCGGCGCCGA ATGCGCAGGG CGGCATTCCC GCGCCGGGCG GGTTGGACAG TCCGCCGAAT
TTCGGCACGC CCGCAACCCC GGCTCCGGCT ACGCCCGCCC CGGCGGATGG CGCCACGACG
CCCGCCCCCG CCGCGCCCGA CCTGGGCGGG CTGGGCGGCC TCTCCGGTCC GCCGCCGGGC
CTGACGGCCC CGCAGCAACC GGCAGGGAAC TGA
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| Protein sequence | MMVFIAQNMA PIMFASLVLF LLFGYPVAFA LAANGLLFFV IGVELAPLSG GNINLSWPLL
NAMPERLWGV MSNETLLAIP FFTFMGIVLE KSGMAEDLLD TVGQLFGPIR GGLAYAVIIV
GALLAATTGV VAASVIAMGL ISLPIMLRYG YDRRIASGTI AASGTLAQII PPSLVLIVLA
DQLGRSVGDM YKGALIPGLV LTGMYMVYIF VMSIIRPNSL PALPKEARTL GSGVTSLFVA
LALTVGMAWL AFRWLYPTHG RDADILAPAL AVIVIYVAAL LDRALKINVM SRLAQQVVIV
LIPPLALIFL VLGTIFLGIA TPTEGGAMGA VGALLLAGVK NRLSYDVIRQ ALLATTRLSA
FVMFILIGAR VFSLTFYGVN GHIWVEHLLT SLPGGEYGFL IAVSVLVFLL AFFLDFFELA
FIIVPLLAPA AEAMGIDLIW FGVLLGVNMQ TSFMHPPFGF SLFFLRSVAP KSPYVDKVTG
QTMQPVTTGQ IYWGAVPYVC IQLVMVAVVM TFPGLVMHYK GAPIDTSNVR FEIPSGGGLG
GLGGLGGLGD PFGQPAAPGT AAPNAQGGIP APGGLDSPPN FGTPATPAPA TPAPADGATT
PAPAAPDLGG LGGLSGPPPG LTAPQQPAGN
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