Gene Pden_1559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1559 
Symbol 
ID4580861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1531502 
End bp1532680 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content67% 
IMG OID639768875 
Productpolysaccharide export protein 
Protein accessionYP_915355 
Protein GI119384299 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.053083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0507525 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACGCAAG CACTTTTTTC GCCCCTTCGA TCCGGCGCGA CACCCATTCG TACGCGCAGC 
CTTGCCGCTC GTCTGACGCG GGCGATGATT CTGGGGGGGA TGCTTCTGGT TTCGGCCTGC
GGGCTGCCGC GCTCTGGTCC CACCAAGGGC CAGATCCTTT CCAGTTCGGT GACCAAGGGC
GGCACCACCC ATATCGTCAA TGTCGACGAC CGGGTGAACC GGGCCGCCAG CTATACCCCC
GCCTACGGCT TCTCGGCCGA TTTCCGCGCA GCCAGCACGG TGGCCGCCGA CGATATCCGC
CCCGGCGACG TGCTGGGGCT GTCGATCTGG GAAAACGTCG ATGACGGGCT GCTGGCCTCG
ATGGGGTCGA GCTCGACCCA GCTGACCGAA TTGCAGGTCG ACAGCCAGGG CTACATCTTC
GTGCCCTATG CCGGCCGGGT GCTGGCGGCG GGCAACAGCC CCGAGGAACT GCGCCGCATC
ATCACCCAGA AGCTGGAAAC CCAGACCCCC GACCCGCAGG TCATGGTGAC CCGCGTCGCC
GGCGACGGCG CCACCGTCTC GGTCATGGGC AAGGTGAACT CGCAAGGCGT CTATCCGATC
GAGCGTCCGA CCCGCACCCT TTCGGCGATG CTGTCGCGTT CGGGCGGCGT CACCATCGAG
CCCGAGATCG CCGTGATCAC CGTCAAGCGC GGCAATTCCA GCGGCAAGGT CTGGCTGCGC
GACCTGTATT CCAGCGCGCG CAACGACATC GCGCTGCGCC CCGGCGACGT GATCCTGGTC
GAAGAGGACG AGCGCAGCTT TACCGCGCTC GGCGCGCTTG GCGGCCAGAC CAAGGTGCCG
CTGGGCAACG AACAGATCAA CGCCATCGAA GCCGTGGCCA TGGTCGGCGG CCTCAGCACC
TCGCTGGCCG ATCCCAAGGG CGTCTTCGTT CTGCGCGAAG AGCCGCAGAC CGTGGCCCGC
GCCGTGCTGG GCCGCGGCGA CATCCATGGC AACCAGCGCG TCGCCTATGT TCTGGACCTG
ACCAAGCCCG ACGGCATGTT CCTGGCGCGC GATTTCATCA TCCGCGACGG CGACACGGTC
TATGTGACCG AGGCACCCTT CGTGCAATGG CGCAAGACCT TGCAGTCGAT CCTGGGCACC
GCCGCCGAAG TCGGCTCGGC CAACAGCGCC TTCGAGTAA
 
Protein sequence
MTQALFSPLR SGATPIRTRS LAARLTRAMI LGGMLLVSAC GLPRSGPTKG QILSSSVTKG 
GTTHIVNVDD RVNRAASYTP AYGFSADFRA ASTVAADDIR PGDVLGLSIW ENVDDGLLAS
MGSSSTQLTE LQVDSQGYIF VPYAGRVLAA GNSPEELRRI ITQKLETQTP DPQVMVTRVA
GDGATVSVMG KVNSQGVYPI ERPTRTLSAM LSRSGGVTIE PEIAVITVKR GNSSGKVWLR
DLYSSARNDI ALRPGDVILV EEDERSFTAL GALGGQTKVP LGNEQINAIE AVAMVGGLST
SLADPKGVFV LREEPQTVAR AVLGRGDIHG NQRVAYVLDL TKPDGMFLAR DFIIRDGDTV
YVTEAPFVQW RKTLQSILGT AAEVGSANSA FE