| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1248 |
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| Symbol | |
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| ID | 4580014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1210724 |
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| End bp | 1212337 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639768566 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_915049 |
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| Protein GI | 119383993 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.710714 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAACC GTTTTCCGCT TCGCGCGCTG CTCCTGGCCT CGGCCGTGTC CTTGGCCGCG
CCGATGACCC TGACCGTGAC CGCGGCGCAG GCCGAGACGC CCGCCGACAC GCTGGTCATC
GCCCATCAGA TCGACGACAT CATCAGCCTC GATCCCGGGC AGAGCTTCGA ATTCTCGGGT
CAGGACGTGG TGCACAGCCT TTACGACCGG CTGGTGGATT TCGATCCGCT GGACCTGAAC
GCCGGGATCA AGCCCAGCCT GGCCGAAAGC TGGGAGGTCA GCGAGGACGG CAAGACCATC
ACCCTGACCA TGCGCGAGGG CGTGACGTTC CAGTCCGGCA ACCCGGTCCG GGCCGAGGAT
GCCGCCTGGT CGCTGCAACG CGCCGTCAAG CTGAACAAGT CGCCGGCCTT CATCCTGAAC
CAGTTCGGCT TTACCGCCGA GAACGTGGAC GAGCGCGTGA CCTTCGACGG CAACCGGGTG
ATCCTGCAAC TGGACCAGCC CTATGCGCAA AGCTTCGTGC TGAACTGCCT TGCCTCCGAG
GTCGGCTCGG TCATCGACAA GGAAACCGCC ATGAGCCATG CCGAGGGCGA GGATTTCGGC
AATGCCTGGC TGTCCACCAA CGGCGCGGGC TCGGGTCCCT ACGCCCTGGG CGCGTGGCGG
CCGAACGAGG CGGTGCAACT GGTCGCCAAT CCCGATTATT GGCAGGGCGC GCCGACGATG
GCCCGGGTGA TCGTGCGGCA CGTCCAGGAA AGCAGCGCCC AGCGGCTGCT GCTGGAGCAG
GGCGATGTCG ACGTGGCGCG CAACCTGACG CCGACCGATG TCGAGGGCGT CGCCGGCAAT
GAGCGGCTGA AGGTCCTGGA CGAGCTGCGC GGCCGCATCC TCTACATGGG GCTGAGCCAG
AAGGACCCGC TGCTGTCCAG GCCCGAGATG GTCGAGGCGA TGAAATACCT GATCGACTAC
GCGGGCATGG AATCGAGCTT TCTCAAGGGC CAGTGGAAGG TGCACCAGAA CTTCCTGCCC
GAGGGCTATC TGGGTGCCGC GGACGAAAAT CCCTGGAGCT ATGACATCGA GAAGGCTCGC
CAGATCCTGA CCGATGCCGG CATTACCTCG GGCACCGTCA AGACCATCGT GCGCGACATC
CGCGAATATG TCGATGCGGC CCAGACCCTG CAAGCCGCCA TGGCCCAGGT CGGGCTGACG
CTGGAAATCC AGCAGATGAC CGGGGCGCAG GTGCTTGACG CCTATCGCGC GCGGCAGGTG
CCGATCTTCA TCGGCGAATG GGGGCCGGAT TACGCCGATC CGAACACCAA TGCCTCGACC
TTTGCTCATA ACCCCAACAA CGCCGACGAT GCCGGGCTGT CGCAGCTGGC ATGGCGCAAC
AGCTGGGCGG TGCCGCAAGA GATGAACCAG GCCGTCGAGG CCGCCACGCT GGAGGGCGAT
ACCGACAAGC GCGTGCAGAT GTATCTGGAC ATCCAGAGCC AGTATCGCGA GATCGCGCCG
ATCATCCCGA TGTTCCAGAA GATCGAGCAG GTGGTGCTGC AGCAGAACGT GCAGAACTGG
ACCTCGGGCG GCTCGGTCAC CTCGGTCAAT TATCGTCAGG TGACGAAGGA ATAA
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| Protein sequence | MQNRFPLRAL LLASAVSLAA PMTLTVTAAQ AETPADTLVI AHQIDDIISL DPGQSFEFSG
QDVVHSLYDR LVDFDPLDLN AGIKPSLAES WEVSEDGKTI TLTMREGVTF QSGNPVRAED
AAWSLQRAVK LNKSPAFILN QFGFTAENVD ERVTFDGNRV ILQLDQPYAQ SFVLNCLASE
VGSVIDKETA MSHAEGEDFG NAWLSTNGAG SGPYALGAWR PNEAVQLVAN PDYWQGAPTM
ARVIVRHVQE SSAQRLLLEQ GDVDVARNLT PTDVEGVAGN ERLKVLDELR GRILYMGLSQ
KDPLLSRPEM VEAMKYLIDY AGMESSFLKG QWKVHQNFLP EGYLGAADEN PWSYDIEKAR
QILTDAGITS GTVKTIVRDI REYVDAAQTL QAAMAQVGLT LEIQQMTGAQ VLDAYRARQV
PIFIGEWGPD YADPNTNAST FAHNPNNADD AGLSQLAWRN SWAVPQEMNQ AVEAATLEGD
TDKRVQMYLD IQSQYREIAP IIPMFQKIEQ VVLQQNVQNW TSGGSVTSVN YRQVTKE
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