| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0589 |
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| Symbol | murD |
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| ID | 4579633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 561731 |
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| End bp | 563131 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639767907 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_914397 |
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| Protein GI | 119383341 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.561941 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCGG TCCAGGGCGT CCAGAACCAG ACCATCGCCG TGCTCGGCCT CGGGCGTTCG
GGCCGCGCCA CCGCCGCTGC GCTTGCCGCC GGCGGCGCCC GGGTCGTCGC CTGGGACGAC
GGCGTCGACA CGCGCGAACA GGCCGAGCAA GAGGGCCTGC ATCTCCTCGA CCTGACCCAG
GACCAGAACT GGGACGGCAT CTCGGCGCTG ATCGCCAGCC CCGGCATCCC GCATCTCTAT
CCGAAACCGC ATCCGGTCAT CGCCAGGGCC TACGCGCTCG GCGTGCCGGT GGACAACGAT
ATCGGCCTGT TCTTCCGCAG CTTCGCCACC GCCGAATGGG AGCGCTTCGA CACCACCCCG
CGTGTCATCG CCGTCACCGG CTCGAACGGC AAGTCCACCA CCACGGCACT GATCCACCAC
ATCCTCAAGG AAACCGGCCG TCCGACCCAG ATCGGCGGCA ATATCGGCAC CGGCGTGCTG
TCGCTCGATC CGGCCCATGA CGGCGAGGTG GTGGTGCTGG AGCTCTCCAG CTACCAGACC
GACCTTGCCC GCGCCCTGAC CCCCGACGTG GCGGTCTTCA CCAATCTCTC GCCCGACCAT
CTGGACCGCC ATGGCGGTCT TGGCGGCTAT TTCGCCGCCA AGCGCCGGCT TTTCGCCGAG
GGCGGGCCGG ATCGCGCCGT GATCGGCGTG GACGAGGTAG AGGGGCGCTA TCTCGCCGGC
CAGCTCGGCA TGGGTGCCGC CGACGACCGG GTGATCCGCG TCTCGTCCGG CCAGAAGCTG
GAAGGCTTCG GCTGGTCGGT CTTTGCCCGC AAGGGCTACC TCGCGGAATA CCGCAAGGGC
CGCCAGGTCG CCTCGATCGA CCTGCGCGGC ATCCAGGGCC TGCCGGGCGC ACACAACCAC
CAGAACGCCT GCGCAGCCTA TGCCGCGGCG CGCGCCGTCG GCATCGCCCC GCGCGAGATC
GAGCGCGCCT TCCACAGCTT CCAGGGCTTG CCGCATCGCA GCCAGACCGT GGCCGAGATC
GGCGGCGTGG CCTGGGTCAA CGACAGCAAG GCCACCAATG TCGATGCCGC CGCCAAGGCG
CTGGCCGCTT TCCCGCGCAT CCGCTGGATC GCCGGCGGCA TGGGCAAGGA TGGCGGCATC
GAGGCGCTGG CCCCCTGCCT CGGCCCGGTG GTGAAGGCCT ATCTGATCGG ACATTCCGCC
CGCGACTTCG CGCTCCAGAT CGGCCAGACC CCCTATGAGA TCGTCGAAAC CATGGAGCAG
GCTGTCGCCC GCGCCGCGGC CGAGGCCCAG CCGGGCGAGA CCGTGCTGCT CGCCCCCGCC
GCCGCCAGCT TCGACCAATA CCCGAACTTC GAGAAACGGG GCGAGCATTT CACCGCCCTG
GTCAAGGCGC TGCAGGCCTG A
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| Protein sequence | MIPVQGVQNQ TIAVLGLGRS GRATAAALAA GGARVVAWDD GVDTREQAEQ EGLHLLDLTQ
DQNWDGISAL IASPGIPHLY PKPHPVIARA YALGVPVDND IGLFFRSFAT AEWERFDTTP
RVIAVTGSNG KSTTTALIHH ILKETGRPTQ IGGNIGTGVL SLDPAHDGEV VVLELSSYQT
DLARALTPDV AVFTNLSPDH LDRHGGLGGY FAAKRRLFAE GGPDRAVIGV DEVEGRYLAG
QLGMGAADDR VIRVSSGQKL EGFGWSVFAR KGYLAEYRKG RQVASIDLRG IQGLPGAHNH
QNACAAYAAA RAVGIAPREI ERAFHSFQGL PHRSQTVAEI GGVAWVNDSK ATNVDAAAKA
LAAFPRIRWI AGGMGKDGGI EALAPCLGPV VKAYLIGHSA RDFALQIGQT PYEIVETMEQ
AVARAAAEAQ PGETVLLAPA AASFDQYPNF EKRGEHFTAL VKALQA
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