| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0224 |
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| Symbol | |
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| ID | 4580804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 205387 |
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| End bp | 207240 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639767539 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_914034 |
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| Protein GI | 119382978 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGGAGA CAGAGCTACG CGGATTCGCT GATCCGTTGT CCAGCGAAAT CTCGAACATA
CTCCGCTCGC GCGGTGAGGC GGACGGTCGT TTGCCGGATG TGGTCGAACA GTCGTGGAAA
CGCTGCCTGA CGGATTACAA CCTGCTGCCC GACGCGGTGC CGAAGGCCGC CGTCCTCAGC
CATTCCGAGA TCCAGATGCT GATGGAGCAG CGCGAGGAGT TCATGCGCAT CGCCGAACCC
GAGGTCGAGC GGCTGTTCCG GCGGCTGGTG GACAGCGAAT ATCTCGTGTC GCTGGCCTCG
CCGCAGGGGG CGATGGTGCT GTTTCGCTGC GACTATCAGT ATCTGAGCGA GCTTGCCGAA
TCCGGGGTCA TCCCCGGCTC AATCTGGGCC GAGGATCAGC AGGGCACCAA CGGCGTGGGC
ACCTGTCTGC GGGTGGGCAA GCCCGTAACC ATCGCCGGCA CCGAGCATTA CGGTTCGGCC
ATCCAGCGGC TGACATGCCT GACCGCGCCG GTTCTGGGCC GCAACGGAGC CATCGACAGC
GTAATCAACG TGACCACGGC GCGTCACGCG GATGCGCGCA TGAACCGCAT GGTACAGAAC
ATCGTCGAAC GATCGGCGCG GCGGATCGAG AACGGCTATT TCGCCCGCAT GAACCGCCGC
AACCTGATGC TGCGGATCGT GGACGGGGGC GTCGGCGTGG CCGACATCGC GGAAGAGGGA
CGGCTGGCGC TGGACGAGAA CGGCAAGGTG ACGTCCGCCT CCTCGGTTAC GTCGCGCATC
CTGGGCCAGG ATGCCGGAAA GCTGGCGGGG CGGTCCGTCG AGGAGCTGTT CGAGATGGAT
CAGTCGATTT TCGACGTTCG CCCCGGTGCG CCGATCACGC TGCACTATCA CGGCCGCTCG
TTGCAGGCGG CTCTTTGCCT GCCGGAATCG CGTCAGCCGA CCCGCAACAG CCTGGTTCCC
GCGCGCCCGG CCACGCCGGC GCTGGGCATG GTCGATCTGG CCGAGGAAGC CTTGCGGATC
AATCCGATCC TTTCGCAGTC GTTGGACCGC GCGCAGCGGC TGCTGTCCGC CGGGCTGCCT
CTTGCCATCA CGGGCGAGCC GGGATCTGGA AAGACCGCCT TCGCGAAGGC CGTCGCGCGC
TGCTGTTTCG GCGAGGACGG CCAGATCGTC TTCATCGACT GCGCATCGTT GCAGAGCCGC
GACGACCTGG CGGCGCTGCT GCAGCATCGA ATCTCGGCAC AACGGACCTG CCTGCTGGTG
GACAGGATCG ACGAGATGGA CGGCGAGCAC CAGACCGCGC TGCTGGCGGT GCTGGAAAAC
GACCGGCAGG CCGGGGCGAA CGGAATCGGC GTCATCGTGA TCTCGGCCCA GGACCTGGAA
CACCTGGCGC GCGAGAACCT CATGCGGGTT GATCTTGTGC ATCGGCTGAA GGGCGGGCAG
ATCGGATTGC CGCCGCTGCG CAGCGCGCCG GATCTGGAGG ACACGATCCT GGATCTGTTC
CGCATCGAAC GCGACGCCCT TGGCAGGCCG GAGGTCGAAC TGGACGAGGA TTCACGCCTG
GTCCTGCTGC ATTATCACTG GCCCGGCAAC CTGCGCGAGC TTCGCAACAC CCTGAGACAT
GCGGTCGCCC TGGCCGACGG CAAGCAGATC GGGCTGGAGC ATCTGCCCGA CAATATCGTC
GAGGAGATCG CGCGCAAGGA CCTGACGGCA CGATCGCAAT CGGAGGCGTC TAAGATCGAG
GCGGCCCTTC GCTATAATGG CGGCAACGTG TCGCTGACGG CGCGCTATCT CGGCGTGTCG
CGGGCCACGC TCTATCGCAA GATCCAGATC CAGAAGGCCC GCGGAGAGGC CTGA
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| Protein sequence | MWETELRGFA DPLSSEISNI LRSRGEADGR LPDVVEQSWK RCLTDYNLLP DAVPKAAVLS
HSEIQMLMEQ REEFMRIAEP EVERLFRRLV DSEYLVSLAS PQGAMVLFRC DYQYLSELAE
SGVIPGSIWA EDQQGTNGVG TCLRVGKPVT IAGTEHYGSA IQRLTCLTAP VLGRNGAIDS
VINVTTARHA DARMNRMVQN IVERSARRIE NGYFARMNRR NLMLRIVDGG VGVADIAEEG
RLALDENGKV TSASSVTSRI LGQDAGKLAG RSVEELFEMD QSIFDVRPGA PITLHYHGRS
LQAALCLPES RQPTRNSLVP ARPATPALGM VDLAEEALRI NPILSQSLDR AQRLLSAGLP
LAITGEPGSG KTAFAKAVAR CCFGEDGQIV FIDCASLQSR DDLAALLQHR ISAQRTCLLV
DRIDEMDGEH QTALLAVLEN DRQAGANGIG VIVISAQDLE HLARENLMRV DLVHRLKGGQ
IGLPPLRSAP DLEDTILDLF RIERDALGRP EVELDEDSRL VLLHYHWPGN LRELRNTLRH
AVALADGKQI GLEHLPDNIV EEIARKDLTA RSQSEASKIE AALRYNGGNV SLTARYLGVS
RATLYRKIQI QKARGEA
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