Gene Pcar_0911 details

Gene Information

• Locus tag: Pcar_0911
• ID: 3724169
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 1076128
• End bp: 1077873
• Gene Length: 1746 bp
• Protein Length: 581 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637750503
• Product: sensory box histidine kinase
• Protein accession: YP_356335
• Protein GI: 77918520
• COG category: [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG2984] ABC-type uncharacterized transport system, periplasmic component; [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 48
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTTTAG CAAACCAAAT GGGAATAGTC AGGTTTTTTA TAATCCTTGC CGTTCTGTTC 
GCTCTGCCAT GGAACACGGA AGCAGCCCGT AAGGAAAAAA TCCTGGTTTT GCACTCCTAT 
CACCAGGGAC TGGAGTGGAC CGACAGCATA ACGGCCGGTA TTCAGTCCGT TTTCAAGCCG 
CTGGACAAGA CCTACGAGCT TTATTATGAG TATCTCGATA CGAAAAGAAA TACAGGGAAC 
GACTATGACA AAAAACTGAC AGAACTTTTT GCTGCCAAAA TTAAAAACAT TCAATTCAAG 
GCAGTGATTA TCGCGGACAA TAACGCTTTG GCTTTCATCA AGAAGGTTTA CCGGTTACTG 
AATGGGCATC CCCCGATAGT TTTTTGCGGT ATCAATCATT TCCAGCCCGA TCTTATGGAA 
AACCTGCCTT TCGTGACGGG CGTCACCGAA GAAACGGATA TTGCCGCTAA CCTCGATTTG 
ATGCTGCGAC TTCATCCCGA ACGCAAACGG ATCGTGGTGA TTCTTGACAA AACCACGACC 
GGGAATGCCA TGAAAAAGGT CATGACCGAA TTCGTTGCGC AGTATCGCCA TCGTGTTCAA 
ATCGAATTTT TGCGGGACTT CACCCTGGAA GAAGCAGCCT CTTTGATCGC GGCTCTGGGG 
CCCGACGACA TGGTCTGCCT GCTGACCTTC AATCGCGACC GGAACAATCA TTTTATTTCC 
TATTCGGAGG GCATCGCCTT GCTGGTAGAG GCGTCCAAGG TACCGATTTA CGGCCCGTGG 
GATTTTTATC TGGGAAAGGG CATCGTTGGC GGCGTGATCA CTTCGGGTTT CGAACAGGGG 
GAGATTGCCG CCCAACTGGC ACTGCGCACT CTGAATGGGG AAAATCCGCA AAACATACCT 
GTCGTCACCG GATCGGGCAC GTATGCCATG TTCGACGACA ACCGGTTGCG GGCTTTCCAT 
CTCGATCCCC GCCGCTTACC GGAGAATGCA CGTATCATAA ACAGTCCCCC AGGGTTTTAC 
GAAAGACACC ACCGCATTTT ACAAATATGC GGCTTGCTGG CCATCGTGCT GCTTGCTTAT 
TGCTGCTGGC GGTTATTCAG CCAAAAGCGC GAGCGAGACA GACTGGTGGA GATGAATTTC 
GCTCTCGACA GGCTAGTGGA AGAAAAAACC GCTTGCCTTA AGGAAACCAA CCAGGTTTTG 
CGGCGGATTG CCATAACCGA TGACCTCACC GGTCTTTACA ATCGCGGCTA TCTGTTGAAA 
CAGCTTGCCG GCAAAATTGA AACCGCTGAA TGTCAAAGTG GCAACTTATC GACCCTTCTT 
CTGGATCTGG ATAACTTCAA ATGGATCAAC GACACCTTCG GCCACGATTT TGGCGACACG 
GTGCTGGAAA AGGCCAGCGC CATTTTCAGG TCCTGCCTGC GGGGAACGGA TCTGGTCGGT 
CGGTATGGAG GAGAGGAATT CCTGGTCATT CTTCCGGATA CCGATCTCGA AAAAGGCCAA 
CTGATCGCTG AGGGCATCCG GAAAAGTATC CAGTCCTGTC GATGGGATCG GGAGAACTTT 
CGAATCACCA TAAGCGGTGG CCTGGTGCAA TACGCGGGCG AGTCGGTTGA AATGCTGTTA 
AAACGCGCGG ACAAGCTGCT GTATCAGGCC AAGGATCTGG GGCGAAACCG CATAGAAAAT 
CGCCTTCGGA AGCCGGACGA CAAGGTCGAG GAAAGTCGGA TCGTTACGCC AACGGCTTGG 
GATTGA 

 

Protein sequence

MPLANQMGIV RFFIILAVLF ALPWNTEAAR KEKILVLHSY HQGLEWTDSI TAGIQSVFKP 
LDKTYELYYE YLDTKRNTGN DYDKKLTELF AAKIKNIQFK AVIIADNNAL AFIKKVYRLL 
NGHPPIVFCG INHFQPDLME NLPFVTGVTE ETDIAANLDL MLRLHPERKR IVVILDKTTT 
GNAMKKVMTE FVAQYRHRVQ IEFLRDFTLE EAASLIAALG PDDMVCLLTF NRDRNNHFIS 
YSEGIALLVE ASKVPIYGPW DFYLGKGIVG GVITSGFEQG EIAAQLALRT LNGENPQNIP 
VVTGSGTYAM FDDNRLRAFH LDPRRLPENA RIINSPPGFY ERHHRILQIC GLLAIVLLAY 
CCWRLFSQKR ERDRLVEMNF ALDRLVEEKT ACLKETNQVL RRIAITDDLT GLYNRGYLLK 
QLAGKIETAE CQSGNLSTLL LDLDNFKWIN DTFGHDFGDT VLEKASAIFR SCLRGTDLVG 
RYGGEEFLVI LPDTDLEKGQ LIAEGIRKSI QSCRWDRENF RITISGGLVQ YAGESVEMLL 
KRADKLLYQA KDLGRNRIEN RLRKPDDKVE ESRIVTPTAW D