| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0848 |
|---|
| Symbol | |
|---|
| ID | 3722846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 1001439 |
|---|
| End bp | 1002851 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637750442 |
|---|
| Product | TolR-like transport protein |
|---|
| Protein accession | YP_356274 |
|---|
| Protein GI | 77918459 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 0.638917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGTA AAATTCTGTG TCTGTCGTTA CTGCTGTTAA CAACCTCGGC CGGCGCAACG
CAAGCGACGC CATCCTTCGA TCAGGTCGCC GGTGAAATCC AGGCCCGGGA GCGAACCGCG
CACCGTGATC GCCAGCTCAC CCTGCGGGAT ATTCAACAGG AGCGCGCCCG GCTCACACGC
ACTCTGCGAC AGTTGCAATC CGAACTTGCC TCCGCAGACA AAAAACTGGC CACCGAGAAG
GCATTGTTGG ACAAGCTTTC CCGCCAGCGC AACACCCTCA AGCAAGATAT CGGCAGCCGT
CTGGCGAGCA AGGAGGAGTT GGATACGGTG TTGCTCGACT TTGTCGGCAA CTTCCTGGCC
AGGGTCGAGG AAAGCCCTTA CAGCGCCCAG CAGCCGGAAA GTCTGGCGAA ACTGCGTGCC
TTCAGCGCCA ACGGCCATGT ATTCGGCATG GCGGATGTAA AAACGCTTTT CGACCTTTAC
TTCACCGATA TGCGAGCCGG AGCCGAAAAG ATCCGTTACA CCGGCAACAT GCTGGATCGC
GGCGGCAACG ATATCGAAGC CGACATCATC CGCCTCGGGC ACCTGGCCGC CCTGCACCGC
TCAGACACCG GCACCGGCTA TCTGCTGCTG AGCCCCGCTT CCGGACGGCT GGTGGCCGGC
GCCGAACCGC CCGGCGGCGT GAAAAGCAAT CTGGACGACT ACTTCGACGG CGAGACCGAC
CGGGTCTTCA CCGACATAAC GGGCGGCGCC GCCATTCGCC AGCTCGCCCG CCGGGACACC
GTGATGAATC AACTGCGCAG CGGCGGGGCG CTGGTGATAC CGATTCTTCT GGTGGGACTG
GTGGCTTTGG CGCTGACCGT CGAGCGACTG CTGTTTCTGG CCCGGGTACG GCATAATACG
GATGAGCTGA TGACCCGCGT CACCGCACTG GTATCCCAAG GCGACTGGGA GACGGCCCTC
AGGGCCACCG CTCCGCACCG CGACCAACCT ACCGGTCGGG TTCTGATCGC CGGGCTGCAA
CATCGCGGCG AAAACCGGGA GATCATCGAA AGCTCCCTGT CCGAAGCGAT CCTCAGGGAG
ACCCCTCGTC TGGAGCGTTT CCTGAGCGCC CTCAAGGTGG CGGCGGCCGT GGCGCCGCTG
CTGGGTCTGC TCGGCACGGT CACCGGCATG ATCAACACTT TTCAGGTCAT CACCACCCAT
GGCACGAGCG ATCCGCGCCT CATGGCCGGC GGCATTTCCG AAGCCATGGT CACCACCCAG
GTGGGTCTGG CCGTCGCCAT TCCCGTCATG ATGATCGCTT CTTTTCTGGG TAGCCGGGCA
CACAAGCTGT CCCAGGACAT GGAAGAAAAA GGCCTGGCCC TCATGGGTGC CCTTCTCAAA
TGGAAAAACA ACGACAAACA GGCAGCGGCA TAA
|
|---|
| Protein sequence | MASKILCLSL LLLTTSAGAT QATPSFDQVA GEIQARERTA HRDRQLTLRD IQQERARLTR
TLRQLQSELA SADKKLATEK ALLDKLSRQR NTLKQDIGSR LASKEELDTV LLDFVGNFLA
RVEESPYSAQ QPESLAKLRA FSANGHVFGM ADVKTLFDLY FTDMRAGAEK IRYTGNMLDR
GGNDIEADII RLGHLAALHR SDTGTGYLLL SPASGRLVAG AEPPGGVKSN LDDYFDGETD
RVFTDITGGA AIRQLARRDT VMNQLRSGGA LVIPILLVGL VALALTVERL LFLARVRHNT
DELMTRVTAL VSQGDWETAL RATAPHRDQP TGRVLIAGLQ HRGENREIIE SSLSEAILRE
TPRLERFLSA LKVAAAVAPL LGLLGTVTGM INTFQVITTH GTSDPRLMAG GISEAMVTTQ
VGLAVAIPVM MIASFLGSRA HKLSQDMEEK GLALMGALLK WKNNDKQAAA
|
|---|
| |