| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0176 |
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| Symbol | |
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| ID | 3722989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 220079 |
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| End bp | 222901 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637749753 |
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| Product | transcriptional regulator |
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| Protein accession | YP_355607 |
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| Protein GI | 77917792 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.544454 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACCCTT TTCTCAATGC GCAACTGAAA TTGTTAGCGG AAAAAATCAA CGCCCTCGGC
AAGGAGAGTC TGGATGATAT CCTGCATGCC CTGGTTAAGG CCGTCCACCT CATGACCGGT
CGGAACACCT GCCGCATCTA CCTGGAAGAC CTGACCAGCG GCGCTCTGTG CGGCGCCATG
GCCACCGGGC ATCGGTCGGA TATCGTCCGC GATCGATCTT TTCCCATCAA CAATACCGAG
TTTCCCGTCT CCCAGGTCTA TCATACCCAT GAAGACCTGC AGATCGCGGA CATGAAAACG
GCCGACAACC TTGTGGTCCG GCAACTGGCG GAGGATTTCA ATATCCGTGC CGCATGCCAT
TTGCCGCTGG TGCACCACGG CCGCGCCGTT GGAGTCCTGG CGGTGGACAG CAGCCGTTCG
GGACAAGTGC TCACCGACGC CCAGATTCGG CAACTGCGAA ACTTTCTCGA CGGCGTTATG
GCCAATATCG ACCAGGCCCG GCTGTACCAT CAACAACTGG TTCTGTCCCG CTGGGTGGAC
GAAGCCAAAA AGAAGGAAGC CGCCCTGTGC ATGGTCAAAT CCGCCGTCAA GCTCATCGAC
AAACTGGCCC TGGCCGCGGT ACTGGTGCCG ACGCCCCTCG GCCCGGACAG CAGCGAGGAG
TGCCTGCAGA TCCTGTCGTC CTACGCCGAG GAACTGGAAG ACAAGCAGGC CTATGAAAAC
CAGCGCCTGA TCCACCTCGG CCCCGGCACC TCGCTGCTGT CGCGATACAT CAACAGCACC
GGCGTGATTG TCGACGACAC CCTGCTGGAA CCCCTCTACT TCCCCACCCT CTCCTCAGAG
ATGCTGCAAA AACGTTACCT GACCGAGGAA CTCGGCCTCA AATCGCTGTA CGTGGTACCG
CGCTACGATC CGCGCACCCG CCGGGTCATC TGCCTGGTCA ATTACTATAC CCGCGGCACC
CACCGCTTCA GCGAATTCGA AAAGGGTCTG CTGGAAGCTC ACGCCGAAAT GGCCCAACGC
GTCATTCAGG AAATCGGCGA CGAGCATGTC GAAATCAAGG TGCTGTCGGA AATCAACGAT
CTGCTGCACG AAAAACTCGA AGGCCTGCCC TCGTTTCTGA GCCGCGTACT GTCCAAGGCG
ACGGAACTCA TCGGCGCCGA CACCGGCAGC ATCGCCCTGG TGCGCAAGGA CCATAACCAG
AGCTGGCTGG TGGTGGAGGA GCCTGACGGA AAACTGGTCG GCGCCAAAAG CAAGCAGCGC
TTGAAAAAAT ACATCCCGCC GCTGCGGGTC GGCGGCACCG AACTGCCCCC GGAGCAGCGC
AGCCTGACCG GCTACGTCGC TCATACGGGG CGCTCCTATA TGGTGGCCGA CGCCCTGGAG
GAAATACGTA CCGGCGGGTT TTACCACGAG GTCACCGATA TCATCAAAAG CGAGCTGGGC
GTGCCGGTGA TCTGCGACGA CGAGGTCATC GCCGTGATCT GCATGGACAG CCTGCGCCCC
TACTATTTCA GCGACGAGCA CAAACGCATC CTGCAGATCA TCAGCCGCAT GATCGCCCGC
CATATCTCGG ACCTGCTGTA TATCGAAAAA CTCACCGGCG AGGTAAGTCG CCTGGGCGGG
GATTACGGCT ACAAGGATCC CAACGTCTCG TCCTACAAAC TCGGCAACAT CATCGGCAAT
TCCGACAAGG CCAACGATAT TGTCGCATTC ATTCAGAGCA TCACGCCGCC GCTGTTCAAT
CGTATCGCCA TGTGGTTCAA CAGCGACGTG CAGGAAGCGA CCCTGGGGCT GCCCTCCATC
CTCATCACCG GCGACACCGG CAGCGGCAAG GAATTTCTGT TCAACAACAT CTACTCGCGT
CTCAACCAGA TGTACCAGCA GAACATCGAC AGCAAAAGCG AACTGCCGGT GAAAAAGACC
AACATCGCCG CCTACAGCGG AGAGTTGACC TATTCCGAGC TGTTCGGCCA CAAACGCGGC
GCCTTTACCG GTGCCCATGC CGACCGCAAG GGCATTCTGG AGGAAGCCCA CGGCGGGCTG
GTATTCCTCG ACGAAATCGG CGACGCCGAC CCCAAGACCC AGGTGCAGCT GCTGCGGTTC
CTCGACAACG GCGGTTTCGT GCGCCTCGGC GAGAATCATA CCCGCTACGC CCGGGTGCTG
CTGGTGGCGG CCACCAACAA AGATCTGGGC CAGCTGATCC GCGAGGGCCG GTTCCGCGAG
GATCTCTACC ACCGTCTGTC GGAATTGGCC ATCGAGGTTC CGTCCCTCAA CGAACGGCGC
GAGGATATTC CCGACCTGGC ACTGCACTTC CTGGGCAAAC TGCACCAGGT ATACAAAAAG
CCCGAAGAAA CCGAGCAGAC CGCGCCGATA TTGAGCCGCG ACGCGCAACT CCTGTTGGCG
CAACACCACT TTGTCGGCAA CATCCGCGAA CTGCGCAGCA TCCTGGTGCG GGCTTTGTTT
TTCCGCAAGG GACGCAACAT CGAAGAGGCG GATATCGCAC GCGTACTGAC CTCTCTCGGA
CCGCGCGGCG AAAAGCATTC CGCCGAAGAA CTCACCAGCC AGGTGGCGCA GGAAACCCTC
GACCGCATCG TACGCGGCGA AGACGACTTC TGGTCCGGCC TGCATGCGCC CTTCACCGAA
AAGCGCATCT CGCGCGATGT GGTTACCGCG GTGATCGAAC TGGCCAGGGA ACGCGGCGCG
GGCAGCATGC CGCAGATCGC CGAAATGCTG CGCGCCTGCG ACAATACCAA TGGGAACGGA
GACGACAAGC GTCTGTTTTA TAAATTCAAG AATTTCCTCT ACAAGACGAT TAAAATCGCA
TGA
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| Protein sequence | MDPFLNAQLK LLAEKINALG KESLDDILHA LVKAVHLMTG RNTCRIYLED LTSGALCGAM
ATGHRSDIVR DRSFPINNTE FPVSQVYHTH EDLQIADMKT ADNLVVRQLA EDFNIRAACH
LPLVHHGRAV GVLAVDSSRS GQVLTDAQIR QLRNFLDGVM ANIDQARLYH QQLVLSRWVD
EAKKKEAALC MVKSAVKLID KLALAAVLVP TPLGPDSSEE CLQILSSYAE ELEDKQAYEN
QRLIHLGPGT SLLSRYINST GVIVDDTLLE PLYFPTLSSE MLQKRYLTEE LGLKSLYVVP
RYDPRTRRVI CLVNYYTRGT HRFSEFEKGL LEAHAEMAQR VIQEIGDEHV EIKVLSEIND
LLHEKLEGLP SFLSRVLSKA TELIGADTGS IALVRKDHNQ SWLVVEEPDG KLVGAKSKQR
LKKYIPPLRV GGTELPPEQR SLTGYVAHTG RSYMVADALE EIRTGGFYHE VTDIIKSELG
VPVICDDEVI AVICMDSLRP YYFSDEHKRI LQIISRMIAR HISDLLYIEK LTGEVSRLGG
DYGYKDPNVS SYKLGNIIGN SDKANDIVAF IQSITPPLFN RIAMWFNSDV QEATLGLPSI
LITGDTGSGK EFLFNNIYSR LNQMYQQNID SKSELPVKKT NIAAYSGELT YSELFGHKRG
AFTGAHADRK GILEEAHGGL VFLDEIGDAD PKTQVQLLRF LDNGGFVRLG ENHTRYARVL
LVAATNKDLG QLIREGRFRE DLYHRLSELA IEVPSLNERR EDIPDLALHF LGKLHQVYKK
PEETEQTAPI LSRDAQLLLA QHHFVGNIRE LRSILVRALF FRKGRNIEEA DIARVLTSLG
PRGEKHSAEE LTSQVAQETL DRIVRGEDDF WSGLHAPFTE KRISRDVVTA VIELARERGA
GSMPQIAEML RACDNTNGNG DDKRLFYKFK NFLYKTIKIA
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