| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2022 |
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| Symbol | |
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| ID | 4909320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1875520 |
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| End bp | 1876542 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125775 |
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| Product | zinc finger, RanBP2-type |
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| Protein accession | YP_001056903 |
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| Protein GI | 126460625 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4260] Putative virion core protein (lumpy skin disease virus) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000288507 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGCAGG TCATCCAGTG GGTCAACCCC AGGGAGGGGG ACATCATCTG GCGGTACCCC
GTGGATAGAA TTGAGTGGGG GGCCCAGCTC ATAGTCGAGG AGTGGCAGGC GGCGGTCTTC
ATGCGCGACG GCAAGGTGTA CGACGTCTTT CGCGCGGGGC GCCACACGTT GACCACTCTC
AACCTGCCCC TCCTAACCCA GGCGTTGAGC AGAGTGGCTG GGTTCGACAA ATCGCCTTTC
ACAGCCACAG TGATATTCGT CTCCCTAAAG CAACACCAGC TCCCGTTCGG AGGCCGGGGG
CAGACCGCCG AGCTGGCCCC CATACAGTTC TACGGCACGG CGTGGTTTAG AGTGGCAGAC
CCAGCCCTCT TCGTCACCCA AGTGGTAGGC GGGCAGAACG TCTACACCAC CGAGGACCTG
CAGAAGTTCT TGAGGGGCTA CTTCAACGAG CTCCTCATGG CCGAGCTCTC CAAGCAGTCC
ATCTTCACAA TATACGCCAA CCTGGAACAA GCCAGCTTTG TGGCAAAGGC GGCCATAGAC
CCCCACTTCC GCCGCATAGG CCTAGAGCTC ATCGACCTGA AATTTGAAGG ACTCGACGTC
ACAGACCCCG TGTGGAGAGA CCGGCTGTTC TACATAAGAG CCACCGGCGT AAACCCAGCC
GAGTACCTGC GCATGGAGAC TGTCCAAAAA GCCGCCGCAG AGCTCGGCAA AAGCCCAGGC
GCCGCCGCGG GCACAGGCAT AGTCCTCATA CCGCCCCTCC TATGGCCACA ACAGACGGCC
CAACAACCCG CAACCGCACA ACCGGCGCCC CAGGCCACCC CACAGCAACA ACCGCAAGTA
GCCGTATCAC AGGGCCAACA ACAACAGGGC ATTGTCTGCC CCCAGTGTGG ATATGTAAAC
CCCCCTGGGG CTAAGTTCTG TATAAACTGC GGCTATATGC TGGGGAAGAA GTGCCCCCAG
TGCGGCTACG TAAATCCGCC AGATGCCAAG TTCTGCGCTA ACTGCGGCAC GAGACTGACT
TAG
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| Protein sequence | MPQVIQWVNP REGDIIWRYP VDRIEWGAQL IVEEWQAAVF MRDGKVYDVF RAGRHTLTTL
NLPLLTQALS RVAGFDKSPF TATVIFVSLK QHQLPFGGRG QTAELAPIQF YGTAWFRVAD
PALFVTQVVG GQNVYTTEDL QKFLRGYFNE LLMAELSKQS IFTIYANLEQ ASFVAKAAID
PHFRRIGLEL IDLKFEGLDV TDPVWRDRLF YIRATGVNPA EYLRMETVQK AAAELGKSPG
AAAGTGIVLI PPLLWPQQTA QQPATAQPAP QATPQQQPQV AVSQGQQQQG IVCPQCGYVN
PPGAKFCINC GYMLGKKCPQ CGYVNPPDAK FCANCGTRLT
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