Gene Pcal_1990 details

Gene Information

• Locus tag: Pcal_1990
• ID: 4908935
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1848012
• End bp: 1848596
• Gene Length: 585 bp
• Protein Length: 194 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640125742
• Product: DNA-directed RNA polymerase subunit E'
• Protein accession: YP_001056871
• Protein GI: 126460593
• COG category: [K] Transcription
• COG ID: [COG1095] DNA-directed RNA polymerase, subunit E'
• TIGRFAM ID: [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCCTTTCA AATTAGTCGA GGCAGAGGAC TATGTACGCA TACCTCCGAG CGAGTTTGGC 
AAGCCGCTTG AGGACATTGC CCTCGCCCAG CTGAAGGCCC GGTACGAAAA CAGGGTTGTG 
CGCGAGGTGG GGTACGTCGT CGCTGTCCTC TCGGTTAAGG TCAAAAGAGA GGGCAAGATA 
ATATTCGGCG ACGGGGGGAC TTACCACAAG GCCAGGTTTA CCCTACTGGC CTTTGTGCCG 
CTGGACGGCG AAGTGGTGGA GGGAGTTGTG GAGAATGTGA GGGAGGTGGG CATGTTGGTC 
CGCATAGGGC CCATCGTCGG GTTTATAAAC AAGATCCACG TCATGGATGA GCCGAATATT 
TTCTTTGACG CGAGCACCAA GAGCTACATA GGCGAGCGCA CTAGGCGGAG GGTGTCTGTA 
GGCGACATAG TGAGGGCGCG CATCACGGGG GTGAGCTTTA CAACGCCGCG CGAGGGGACA 
GACCTCCTCC TCCGCGTCAC AATGACCATG AGGATGCCCG GGCTTGGGAA ACTAGAGTGG 
ATTAAGGAGA GAGAGAAGAA GGCGGCCCCG GCCAAGAAGG CATGA 

 

Protein sequence

MPFKLVEAED YVRIPPSEFG KPLEDIALAQ LKARYENRVV REVGYVVAVL SVKVKREGKI 
IFGDGGTYHK ARFTLLAFVP LDGEVVEGVV ENVREVGMLV RIGPIVGFIN KIHVMDEPNI 
FFDASTKSYI GERTRRRVSV GDIVRARITG VSFTTPREGT DLLLRVTMTM RMPGLGKLEW 
IKEREKKAAP AKKA