Gene Pcal_1987 details

Gene Information

• Locus tag: Pcal_1987
• ID: 4908971
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1845980
• End bp: 1846489
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640125739
• Product: histidine triad (HIT) protein
• Protein accession: YP_001056868
• Protein GI: 126460590
• COG category: [F] Nucleotide transport and metabolism; [G] Carbohydrate transport and metabolism; [R] General function prediction only
• COG ID: [COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 36
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTGGATAG AGATATTAAG ACCCGGCGTT GTGGACGATA TGGAGTTCCG GGTGGTGTTT 
GCCCCGTGGC GGTATAAGTA CATAAAGGCG ATTGGGAAAG GCGGGTGTTT TCTATGCGAG 
GCGGCTAATC AACAAGGCCG CGACGACGAG TTGCTCGTGC CTCTCAGGGG TCGGCACGTC 
TTCCTGATCC TCAACAAGTA CCCGTATACG TGGGGCCACG TCATGGTGGC CACGTACCGA 
CACATAGCCA CTGTGGAGGA GATGACAGTG GAGGAGTGGG CGGAGATGAT CCAAATGGCT 
AAGAGGGCTG TCGAGGCGTT GAAAAAGGTC GTCGGGGCGC AGGCCTTCAT AATCGGCCTC 
AACATAGGCA GAGCAGCGGG GGCCGGGCTA GAGAGCCACA TCCACCTCCA CATAATCCCA 
AAGGACACCG AGGTGAAAGC CGACGACTTA GACGCGGCGT TGGCCGAGTT GACCAAGAAG 
CTGAGGGAGG CGCTTGTACA CACGGCGTAG 

 

Protein sequence

MWIEILRPGV VDDMEFRVVF APWRYKYIKA IGKGGCFLCE AANQQGRDDE LLVPLRGRHV 
FLILNKYPYT WGHVMVATYR HIATVEEMTV EEWAEMIQMA KRAVEALKKV VGAQAFIIGL 
NIGRAAGAGL ESHIHLHIIP KDTEVKADDL DAALAELTKK LREALVHTA