| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1955 |
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| Symbol | |
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| ID | 4908655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1822116 |
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| End bp | 1823393 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640125708 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001056837 |
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| Protein GI | 126460559 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCATA GAGTATTGGC GATATTTCTC ACGTCGTTTG TAACGCCGTT TGTGAATAGC
ACCTTGAGCA TTGCGCTTCC CCAGGTGGCT AGGGAGTTTG GGATACCGCC TGCCGCCGCG
GTCAGTTTGC TTGTGGTGTT GACGTTGGCC GTTGCCGCGT TGGCTCTGCC CATGGGTAGG
CTGTCGGACG TCGTGGGGGC GCACCGCGTG TTTAGGGCTG GTCTACTGGT GGCGCTGGCT
GGCCTCGCGG CGTCCTCTAC CTCGCCCAGC CTCTACGCGC TGTATGCGGC TTTGGCGTTA
ATGGGCGGGG GGCTGGCGGC GGTCTTTGGG AGCAACAACG CACTTCTGGT GCAAATAGCG
CCGCCTGGAC GTAGGGCGTC TGTCGTGGGC ATGAACTCCA TGTTTGTATA CATTGGCCTA
GTCTCTGGGC CACTGGTTGG CGGCCTCCTC GCCTCTGTCT CGTGGCGCCT CATATTTCTC
CCGGCGGTCG TCTTGACGGC CTTGGCGCAT CTCCTCGTGG GTCCTCCACC CGCCGCACCG
GGGAGGGGGG CTGGGTACGA TTGGCCGGGG GCTCTACTCC TCTCCTCTGC AGTGGTCCTC
CTCGTCATGG GCTTCGCCAA TGTGGGCCTG GCGCTGACTG GCTTAGTCCT TCTGGCTTTG
GCCGTGGTGC TTGAAAGTAG GCGCGAGGCG CCTATTCTCA ACGTGAGGCT CTTTAAGGAC
GTCGTCTTTG CTTCGTCTGT GGCCTCGGCG TTCCTCAACT ATCTCTCCAC GGCGGCTCTC
ACGCCGGCCT TGAGCCTGCT TTACCAGTCC GTATACGGCG TGCCCCCAGG CGCCACGGGC
GCCCTGCTCT CAGTTATGTC CATTGCAATG GCCGTCTTTG CCCCTCTCGC GGGCAGACTA
AGCGATAGGT ATCAGCCAGC GTTGCTTGCG GCGGCTGGCT CGGCAATTCT CGCCGCATCC
CTCTTCCTCT ACTCTCGCGG CACGCCCATC CAATGGGCCC CCCTCTACCT CTTCGCCATA
GGGCTGGGCT TTGCCCTCTT CATTGTCCCC AACACAACCA TTATTTTGAC ATCGGCTCCG
CCTGGGGTAG CCTCTGCCAT GGTCGCCGAG GCGAGGGTCT TGGGGCAGTC TGCCAGCAAC
TCCCTGGCGG CCTACGTCTT GCAAAGGGCA GGAGGCTTGG AGGCCGGCGT GTACGACTTG
TTGACCCTCT TGGGCTACTT CGCCGTTGCC ACCGCGGCGT TGAGCTTGGC GCGCTACTTG
CGCAGGCTAG CCCATTAG
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| Protein sequence | MDHRVLAIFL TSFVTPFVNS TLSIALPQVA REFGIPPAAA VSLLVVLTLA VAALALPMGR
LSDVVGAHRV FRAGLLVALA GLAASSTSPS LYALYAALAL MGGGLAAVFG SNNALLVQIA
PPGRRASVVG MNSMFVYIGL VSGPLVGGLL ASVSWRLIFL PAVVLTALAH LLVGPPPAAP
GRGAGYDWPG ALLLSSAVVL LVMGFANVGL ALTGLVLLAL AVVLESRREA PILNVRLFKD
VVFASSVASA FLNYLSTAAL TPALSLLYQS VYGVPPGATG ALLSVMSIAM AVFAPLAGRL
SDRYQPALLA AAGSAILAAS LFLYSRGTPI QWAPLYLFAI GLGFALFIVP NTTIILTSAP
PGVASAMVAE ARVLGQSASN SLAAYVLQRA GGLEAGVYDL LTLLGYFAVA TAALSLARYL
RRLAH
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