| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1924 |
|---|
| Symbol | |
|---|
| ID | 4908305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1791516 |
|---|
| End bp | 1791974 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640125675 |
|---|
| Product | bacterio-opsin activator |
|---|
| Protein accession | YP_001056806 |
|---|
| Protein GI | 126460528 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTTC TTAGAGTTGT TTTACGTACA TGCCCAAAGG TCCCCCGCGA CGCCTATGCC
CATCTAGGCT TTCACATGCG CAATGGGCAT GTAATACACC TTGTGGCCAC CCCTCGGGGC
GTGGAGAGGG TAGTAGCCAA ATGCGACGAG TGTGTCTTCT ACCAACTGGC GTCAAGCGGG
TACATCTTCG GCGGAGTCAA GCTGGGCGAG GGGCGTATCA CTATCGTGGT GACTGGCAAC
GGCGCTGTTA AAAGGGTCTT GAGAAACTCG CCCCAAGTGG TAAAGGTAGA GGAGGTGTCC
TACAAGAACC TAGTGCTCAC TGAAAAACAG CGAGACGCGC TCCTCCACTT GGCAATGGGC
AAGGGGGCCG GCGACTTGGC CAAAGAGCTG GGCGTAAGCA GAGTGGCGGC GCTTAAGCTA
ATTAGGAGAG CTTTGAAAAA GGTGGCCCTC CTAGTCTAG
|
|---|
| Protein sequence | MQFLRVVLRT CPKVPRDAYA HLGFHMRNGH VIHLVATPRG VERVVAKCDE CVFYQLASSG
YIFGGVKLGE GRITIVVTGN GAVKRVLRNS PQVVKVEEVS YKNLVLTEKQ RDALLHLAMG
KGAGDLAKEL GVSRVAALKL IRRALKKVAL LV
|
|---|
| |