| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1821 |
|---|
| Symbol | |
|---|
| ID | 4908369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1688542 |
|---|
| End bp | 1688784 |
|---|
| Gene Length | 243 bp |
|---|
| Protein Length | 80 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640125571 |
|---|
| Product | deoxyribonuclease |
|---|
| Protein accession | YP_001056704 |
|---|
| Protein GI | 126460426 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3269] Predicted RNA-binding protein, contains TRAM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGAA GAGGTAGAGG TGGCGGCGCG CCGCGTAGGC GGCGCAGCCC GCCGGGTCCA
AAACCGGTTA AGGAAGGCGA CGTGTTGGAG GTGGACATCG TGGAGAAGTC GCGTAGGGGA
GATGGCGTGG CTAAGGTGGA GGGCTTCATT GTCTTTGTCC CTGGGGCTGA GCCAGGGCAG
CACGTAAGGG TTCAGATAGA GAGAGTGGGC GACACTTACG CGGTTGCAAA AATAGTCAGC
TGA
|
|---|
| Protein sequence | MERRGRGGGA PRRRRSPPGP KPVKEGDVLE VDIVEKSRRG DGVAKVEGFI VFVPGAEPGQ
HVRVQIERVG DTYAVAKIVS
|
|---|
| |