| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1812 |
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| Symbol | |
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| ID | 4908863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1681911 |
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| End bp | 1682993 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640125561 |
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| Product | THUMP domain-containing protein |
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| Protein accession | YP_001056695 |
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| Protein GI | 126460417 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1818] Predicted RNA-binding protein, contains THUMP domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACCTAA TAATTAAGAC AAGGAGAGGA TTTGAGAAAC TGGCGGCGTC ATACATAAAA
GAGCTGGTAG GCGAGGGTGC TGAGGTGTTG CCAGCGCCGA GCGGGTACTT AGGCATAGTG
GTCGTAAAAG GCCTCGGCGA GGGGAAGTGG AAAATCGCCG AGCTAATAGC CGAAAAGGTG
CTCGAGGCGG ACAGAATTCT CGTGGTAGAG GAAGTTGTCA AGGCGGACAT CGCCGAGATT
GAGAAGGCGG CTGTGGAAGT GGCCAAGCGG TATATCTCGC CTGGCGACAC CTTCGCCATT
AGGACCACCA GGAGGGGTAC GCACCCCTTT ACGTCAATTG ACGTAAATGT AAGAGTGGGC
GCCGCGGTCA AGGAGGCCAC GGGGGCCGAG GTCGACCTAG AGGAACCGGC GAAGCCTCTA
TACGTGGAAA TATTTCAAGA CGTAGCCGCA GTGTGCGTGC CAGCCACTAG AGAGTACAGA
AAGTTGCGCA GAGACAAGCC CCTGACGCTC AACGCCCTGA GGAAAGTTGC CATTGGGCAA
ATGGTGTACG AGGGTGACGA CGAGGCGGTG AAAAAGATGG GCGAGAGAAT CGGAAGAGCG
GCCCAGACCT TTGAAGTGGC AGAGCTGGCG ATCCTTTTGC ACAAGCAGAT CCCCGCGAGG
ACGCTACGCG TCTTCCTCGA GGCCGTGGAG GCCGGCGTCG AGAGTAGATA CCAAATACAG
ACGAGGAGCT ACGGGAGGCC TGTTCACAAG GTCCCCATAT CTGTCTACGA GCTCTACCAA
TACGTGAGAA GCAGGGCGGG CGAGCCGCTG ATAGTCACAG ACCCCAAAGG CGACTATGTA
ACAGCGGTGA AAGAGAGGCT AGCCCAGCTC TTCGCCCGTG AGAGAGTAAA CGTCTTAATA
GGCGCCAGAG AGGGCATACC CCCCGGCATA TACCGATTCG CCGACGTGGT GGTAGACCTA
ATACCCGAGG TAACCATAGC CACAGACTTC GTAATCCCCT CCCTAATGAT AGCCTTTACC
ACGGCCCTGG AGGAGGCAGG CGCCCTGCCG AGATATGCGG GAAAGCGGGT AAAACATAAA
TAG
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| Protein sequence | MDLIIKTRRG FEKLAASYIK ELVGEGAEVL PAPSGYLGIV VVKGLGEGKW KIAELIAEKV
LEADRILVVE EVVKADIAEI EKAAVEVAKR YISPGDTFAI RTTRRGTHPF TSIDVNVRVG
AAVKEATGAE VDLEEPAKPL YVEIFQDVAA VCVPATREYR KLRRDKPLTL NALRKVAIGQ
MVYEGDDEAV KKMGERIGRA AQTFEVAELA ILLHKQIPAR TLRVFLEAVE AGVESRYQIQ
TRSYGRPVHK VPISVYELYQ YVRSRAGEPL IVTDPKGDYV TAVKERLAQL FARERVNVLI
GAREGIPPGI YRFADVVVDL IPEVTIATDF VIPSLMIAFT TALEEAGALP RYAGKRVKHK
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