| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1713 |
|---|
| Symbol | |
|---|
| ID | 4909012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1594156 |
|---|
| End bp | 1594902 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640125460 |
|---|
| Product | uroporphyrin-III C-methyltransferase |
|---|
| Protein accession | YP_001056596 |
|---|
| Protein GI | 126460318 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.116043 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCCGTG TATATATTGT AGGCGCCGGG CCTGGGGACC CCGAGCTTAT TACTGTCAAG
GGCCTTCGCC TGCTCCAAGC GGCAGATGTC GTGGTGTACG ACAGGCTTGT GGCCAAGGAG
CTTCTGAGTT ACACAAAGCG GGGGGCCCTC CTCGTGGATG TTGGGAAGAG CCCCGGCGGC
GTGGGCCCCT CGCAGGAGGA AATTAACGAA CTGCTGTACA AGTACGCCAA GGCTGTGGAT
ATTGTGGTGA GGTTGCATGG GGGCGACCCC CTTGTCTTTG GCCGAGGCTT CGAGGAGTGT
CTATACTTGG CAGAGAGGGG GATCTACTGC GAGTTTGTCC CCGGGGTCAC CAGCGGCCTT
GCCGCCCCCG CTAAGTACTA CATACCTCCA GTGGCGAGGG GCATTGCGAG TTCTGTGGCG
CTTGTTACCG GCAGAGAGGA CCCAAGCAAG GGGAGGAGGT TTGTAAATTT CAGGAAGCTG
GCCGGCGCAG TGGACACCTT GATTATATAC ATGGGTGCGT CTACGGCGGG GGAGATTGCC
AGAGAGCTGT TGGAGGGAGG GCTGAGCCCC GAGACTTCAG TGGCGGTGAT AAGGTCCGCC
TACTTCAGCG ACGAGGAGTT TATCACGACG ACTTTGGGGG AGCTTAAGAG CGTGGCTAGC
CCGGCGATTA TTGTGGTAGG TCACGTGGTG GCAAAGGGCG TCGCGTTGAT GGAGCATGTA
AGGAAGATTT CACCACCGCC CTCTTAG
|
|---|
| Protein sequence | MGRVYIVGAG PGDPELITVK GLRLLQAADV VVYDRLVAKE LLSYTKRGAL LVDVGKSPGG
VGPSQEEINE LLYKYAKAVD IVVRLHGGDP LVFGRGFEEC LYLAERGIYC EFVPGVTSGL
AAPAKYYIPP VARGIASSVA LVTGREDPSK GRRFVNFRKL AGAVDTLIIY MGASTAGEIA
RELLEGGLSP ETSVAVIRSA YFSDEEFITT TLGELKSVAS PAIIVVGHVV AKGVALMEHV
RKISPPPS
|
|---|
| |