Gene Pcal_1682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1682 
Symbol 
ID4909617 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1567944 
End bp1568579 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content57% 
IMG OID640125429 
Producthypothetical protein 
Protein accessionYP_001056565 
Protein GI126460287 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000472975 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGACCATT TCGACTACTA TGGCCCAATT ACCGATGTAA AAATTCTGCG GGAGCCGCGC 
TTTCTGCTGT CAGCGATAAT CATAGGCCCC TCGGAGGAGG GATTTGAACA CGCCATCGCC 
GCGTGGAGCT CCTTTGGGAC TCTAGAGGTG GTTGAGGGCG TGTACGCATA TTTGATGCAA 
ATGAAGAGGG GGCTTCTCAC GAAGAAAGAG CTGGCGCACA AGCTAATCCC CCTATTGCAA 
AAGGCCACAG TAGCGGACAT CCTCGCCCTC CAGAGGGTGT TAAAGCTCGG CGCCGGGTTT 
ACCACCTGCG ACATTGGCTT AGTGGTGCTT TCCCACGTCC CGGTAGTCGG CGCAACGCCG 
CCGAGGCGCC CCTCAACTGT TCTACTTGAA AAGATGGGAG AGGAGTCCGT GGTCTATGTG 
GCCAGAAATA ACGAGGGGTC TCCCGTCTAC GACTTAGAGA CCATGTGTAT AATGCCCATG 
TCTGAGGGAG AGGCGCCCCA CCCCTTGTAC GCTGCCTACT TGAGGGGGTA CAAAGTGGTG 
ACTGAGGGCA TCCCCGGGGA GGGCGACTTA TGCGTCGTGC ACAAGAGGCT GGGCGTCAGG 
TGTCGTAATC TTTGGCAGTT CCCAACGACG CCATAG
 
Protein sequence
MDHFDYYGPI TDVKILREPR FLLSAIIIGP SEEGFEHAIA AWSSFGTLEV VEGVYAYLMQ 
MKRGLLTKKE LAHKLIPLLQ KATVADILAL QRVLKLGAGF TTCDIGLVVL SHVPVVGATP 
PRRPSTVLLE KMGEESVVYV ARNNEGSPVY DLETMCIMPM SEGEAPHPLY AAYLRGYKVV 
TEGIPGEGDL CVVHKRLGVR CRNLWQFPTT P