| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1655 |
|---|
| Symbol | |
|---|
| ID | 4909421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1545257 |
|---|
| End bp | 1546504 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640125402 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001056538 |
|---|
| Protein GI | 126460260 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.347417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATGACT ATGTGGTAGT GGGGGCGGGG GTCGTGGGCA TGGCCACGGC CTTTCATATC
AAGCGCCTTG CGCCACGCGC CAAGGTTTTA GTCGTGGATC AAAACGTGGG CGTTGGAATG
GGGGATACGG CTAGGTCGGC CGCGGCCTTT AGGACTATAT TCACGTCGTG GATAAACCGG
GCCTTGGCCA AGTCCAGCGT CGACTTTTAC CGCAGTGTCC AGAGCAGGGG GGTGGACTTG
GGGATGAGGT TCGTGGGGTA CCTCTTCCTA GTGCCTGAGG AGTCGAGGGA GGCGATGTTG
AAAGTCGTCG AAGAGCTTAG GCGGATGGGG GTGGGGGTTG ACGTCTTTGA GAAATTGGAC
ATGCCCATTA GGTTTAGAGT GAGAGACGAC GAAGAGGCTA GAGAGATGGG GCTTCCCGAC
GTGGCGTTCT CTATCTTGGT GAGAGATGCG GGGATAATAG ACCCGGAGAG GGTGGTTAGA
TACTACTACG AGCAGTACCT CAACGAGGGC GGCGAGGTGC TGTTTAACGC AAAGGTAGAG
AGCGTGGCCT TTTCGCCGAA GAGGCCAATT GGGATCCCCG GCGAGCCGTT TCCTTGGCAG
GATGTAAAAG TGAGAGGCGT GGAGACCACT GCGGGCTTCG TGGAGGCGAA GAACGTGGTT
TTGGCCACGG GGGCCTGGAC TGAGCGGCTT GCCGACGCTT TGGGCTTTGG GCTCCCCATA
AAGCCTAGGA AGCGGCAAGT CTTTGTGGTA AATGCTGAGG GCGAGTTGGA GGACCTACTG
CTGTCCGGCC TGGCCGAGCG GTATGCCCCA ATGATCATAT TGCCCAGGGG GATCTACATC
AGGCCTGAGC CGTCTGAGAA GACCTTCTGG ATAGGAGTCG CCGATAGGAG GCCGTACCGC
TTTGAGGACC CCCCAGAGCC AGAGGAGACG CTGTGGCGCT ATGGCATTTA CCCAGTGTTG
ACGAAGTACG TCCCCGCCTT TGAGGGGAAG ACTCCGCAAG CCGCGTGGGC AGGCCACTAC
GACGAAAACG TAGTGGACTA TCAGCCGATA GTTGATAGGC TAGCCGAGGG GTTGTACATT
GCGGCTGGGA CCTCGGGGTC GGGGATCATG AAGGCAGACG CCGTTGGGAG AATTGCCGCG
TACCTAGCCC TGGGGTATGA GAAGGCAGAA CTCTACGGGG GAACCGTGGT GGAGAGCAAC
GTCCTAAAGG CAAATAGGTG CCTGGAGCCG GAGAGACTTG TGATATGA
|
|---|
| Protein sequence | MYDYVVVGAG VVGMATAFHI KRLAPRAKVL VVDQNVGVGM GDTARSAAAF RTIFTSWINR
ALAKSSVDFY RSVQSRGVDL GMRFVGYLFL VPEESREAML KVVEELRRMG VGVDVFEKLD
MPIRFRVRDD EEAREMGLPD VAFSILVRDA GIIDPERVVR YYYEQYLNEG GEVLFNAKVE
SVAFSPKRPI GIPGEPFPWQ DVKVRGVETT AGFVEAKNVV LATGAWTERL ADALGFGLPI
KPRKRQVFVV NAEGELEDLL LSGLAERYAP MIILPRGIYI RPEPSEKTFW IGVADRRPYR
FEDPPEPEET LWRYGIYPVL TKYVPAFEGK TPQAAWAGHY DENVVDYQPI VDRLAEGLYI
AAGTSGSGIM KADAVGRIAA YLALGYEKAE LYGGTVVESN VLKANRCLEP ERLVI
|
|---|
| |