| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1639 |
|---|
| Symbol | |
|---|
| ID | 4908769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1526396 |
|---|
| End bp | 1528135 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640125386 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001056522 |
|---|
| Protein GI | 126460244 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1964] Predicted Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAC AAGTGCTGGA GCTAGAGGCT AAGCCGAAGA GGCTGGTGGA TCTCTCCAGG
TTTAATCTGC CAGAGAGGTA CAAATCGACG TTGACAAATG AGAAGTGGCA GACGATGGTC
AAGAGGCAGT ACGGACTGCC AGAGGATACC CGCGCAGTGA AGGCGACGCT GTCTCTCTGC
CCAGTCTGCA ACAGGAGGAT ACCGGCTGTG GTCTACGAGG AGAACGGTGC TATATGGCTT
AAGAAGAGTT GCCCAGAACA CGGCGTATTT GAGGACTTGT ACTGGGGCGA CGCGGAGATG
TACTACTACT TCCTCCAGTG GGACAGGCCC GAGTACATCG CCAAGGGCCT TGCAAACCCC
TACACAGATC TGGAGTTCTA CAAGGACATG GGCTCTTGTC CCGAGGGCTG CGGCCTCTGC
CCAGTGCACA AATCCAACAC CGTGTTGGCC ATAATCGACG TCACCAATAG GTGCAACATG
GCGTGCCCCG TGTGTTTCGC CAACGCCGGC GCCGCCGGCT ACGTCTATGA GCCGACCCTA
GAGCAGATAG AGTACATGTT GCGCACGTTG AGGGCGCAGA AGCCGTGGCC CCCCAACGCG
ATTCAGATAT CGGGCGGCGA GCCTACGCTT AGAGACGACT TGCCCATAAT CGTATCCATG
GCCAAGAAGC TCGGCTTTAC GCACATTGAG GTGAACACAA ATGGCATTAG GCTGGCCAAC
GAGCCGGAGT ACTACAAGGC CCTGCTAGAC GCGGGCATGT CCACCATATA CCTCCAGTTC
GACACGATCG ACGAAAAGAA CGAGGGCGTG TGGCGCCACA GGCTTTACCA CCCCAAGGCC
TACGCCGCCA TAAAGTACAG AGTAATTGAA AACGCGAGGA AGCTGGGCCA CCGCTCCATA
GTCCTAGTGG TGACTCTGGC CCGCAACTAC AACGACAAGG ACTTGGGCAA GATCATCGAC
TTCGCAATTC AGAACAGAGA CGTGGTGAGG TGGGTGAATA TACAGCCCGT GTCCTTCTCA
GGCCGCGCCA GGCTGTACAG CAAGGAGGAG CTCCGCAAAT TCCGCATAAC GATCCCGGAC
ACCATAATTG AGATTGAGAA GCAGACCGGC GGAGCCATCA GCAGGTGGGA CTGGCGCCCC
ACCAACTGGC CAGTGGCCGT GGCCAAGATG GTCGAGGCGT TGACAGACTC GCCCAAGCCT
CTCTTCTCCA TGAACCCCAT GTGCGGCGCC GCCACCTTCA TATACTACGA CGAAGACGAG
AAGCGCATAT ACCCAATCAC AAAGTTGGTA GACGTCGACG CGTTTGAGCG CGGCGCGTGG
GATGTGTACT ACACAGCGGT GAAGGGCGGA GTGTATAAGC AGGCGGCTAA GCTAAAGGCG
CTGAAGCTAT TGAAAGCGGT CAAACACAAG AGGGTAAAAG ACTTGATCTA CGACTTCCTC
GTGAAAAAGG ACTACGAGTC GCTTGGCCGC TTCTTCTTCA ACGTGGTGGG CATCGGCATA
ATGCACTTCA TGGACACAAT GAACTACGAC GTAGAGAGAG TGCAGCGCTG CGACATCCAC
TACGCGACGC CAGACGGCCG CGTATTCCCA TTCTGCACAT ACAACGTCGT CGGACACAGA
GAAAAGGTAG AGCAGTCCTT TAAGGTCGAT CCAAAGACCT GGGTGAAGGT GACCGGTGTA
TCTCTGACCG GGTGGAACAA GCAGAAATTC CAGGAAATAC GCACAAGCAT AAGCCCATAA
|
|---|
| Protein sequence | MSKQVLELEA KPKRLVDLSR FNLPERYKST LTNEKWQTMV KRQYGLPEDT RAVKATLSLC
PVCNRRIPAV VYEENGAIWL KKSCPEHGVF EDLYWGDAEM YYYFLQWDRP EYIAKGLANP
YTDLEFYKDM GSCPEGCGLC PVHKSNTVLA IIDVTNRCNM ACPVCFANAG AAGYVYEPTL
EQIEYMLRTL RAQKPWPPNA IQISGGEPTL RDDLPIIVSM AKKLGFTHIE VNTNGIRLAN
EPEYYKALLD AGMSTIYLQF DTIDEKNEGV WRHRLYHPKA YAAIKYRVIE NARKLGHRSI
VLVVTLARNY NDKDLGKIID FAIQNRDVVR WVNIQPVSFS GRARLYSKEE LRKFRITIPD
TIIEIEKQTG GAISRWDWRP TNWPVAVAKM VEALTDSPKP LFSMNPMCGA ATFIYYDEDE
KRIYPITKLV DVDAFERGAW DVYYTAVKGG VYKQAAKLKA LKLLKAVKHK RVKDLIYDFL
VKKDYESLGR FFFNVVGIGI MHFMDTMNYD VERVQRCDIH YATPDGRVFP FCTYNVVGHR
EKVEQSFKVD PKTWVKVTGV SLTGWNKQKF QEIRTSISP
|
|---|
| |