Gene Pcal_1590 details

Gene Information

• Locus tag: Pcal_1590
• ID: 4908357
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1476337
• End bp: 1477002
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640125338
• Product: ribosome biogenesis protein
• Protein accession: YP_001056474
• Protein GI: 126460196
• COG category: [S] Function unknown
• COG ID: [COG1756] Uncharacterized conserved protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGATCCTCG TCTTGGCCGA GGCCGCGCTG GAGCTAGTGC CAGAGAGCTT GTGGCGGCAC 
CCAGCCATAG TGGCTGACGC CAGGAGGAGG GGGAAGAAGC CGGGCGAAAT ACTGCTGGAC 
CGGGCTAGAC ACCACGTGGC CATGGCCAAG TTGGACAAGG CGGAGAGGAG GGGCAGGCCC 
GACATTGTTC ACCAAGTGCT TCTGGCGTTT CAGTACAGCC TCTTGAACAG GGCGGGGAGG 
GGGCGGGCGT TTGTACACAC TGTGGGCGAC TACATAATCT CCGTCAAGCC GGAGACCAGG 
GTGCCCAAGA ACTACAACAA CTTTGTCTCT CTAATGGAGC AGCTCTTCAA GGTGGGCAGA 
GTGCCCCCCG AGGGGGAGGC GCTGATGGAG GCGAGGCGGG GATCCTTGGC CGCCCTCTTG 
GAAGAGCTGG GGGGCAAGTG GGTCGCACTG CACGAGCAAG GCAGGGCTGT TTCCTTCGCG 
GAGCTGGGAA GGGCTGTGGC CGACGCCGTG GTCGTAGTGG GGGGCTTCCC CCACGGCGAC 
TTCGAGAACA AGTGGATCTT GGAGGGGGCC GAGGCCGTGT ATAAAATTGG CAACGTCTCT 
CTGGACGCAG CGCAGGCGGT GTGCCGCGCC GTGGCGGCGG CTGAGGCGGC CTTGGGCTTA 
ATCTAA 

 

Protein sequence

MILVLAEAAL ELVPESLWRH PAIVADARRR GKKPGEILLD RARHHVAMAK LDKAERRGRP 
DIVHQVLLAF QYSLLNRAGR GRAFVHTVGD YIISVKPETR VPKNYNNFVS LMEQLFKVGR 
VPPEGEALME ARRGSLAALL EELGGKWVAL HEQGRAVSFA ELGRAVADAV VVVGGFPHGD 
FENKWILEGA EAVYKIGNVS LDAAQAVCRA VAAAEAALGL I