| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1575 |
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| Symbol | |
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| ID | 4908141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1463083 |
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| End bp | 1464411 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640125323 |
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| Product | nickel-dependent hydrogenase small subunit |
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| Protein accession | YP_001056459 |
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| Protein GI | 126460181 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
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| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAGA TCACTAGGAG AGATTTCATA AGGGCAGGCT CTCTAGCCGC CGCTTTAAGC
GCGCTGAACT GGTCCGCTCT TGTTAAAGCC GCTGGAGAAG CCGTAAGGTC TGGCGCCGTA
AACATCGTCT GGTTTGAGGC ACAGGACTGT GCAGGTAATA CCACGGCGGT TATACAAGCC
ACAGACCCCT CGCTACTTGA CGTGCTTCTA GGCACAACTC CCCTCGTTGG CCCTGGCACT
GTGAGACTAA TCTTCCACGA GACTGTGATG CCGCAGTGGG GCACATACCA TGTAAAACAA
GCGAGTGATG TGGCAAGTGA GAAGATCCTA GAGTCCTATG TGGAACACCA GCCGCCTCCT
GGCGATGCAA TGAAGATTCT GGAGGAAATA GCCCAGGGCA AGTACGGCCC GTACGTCTTA
GTGCTTGAAG GTAGCTTCCC GCAGGAGTAC GGGATAGAGG GGTCCAACAT AAAGCAGGAG
GGAGGCTACT ACTGCGTAGT AGGCCACAAG ACTTGCACAG CGTGGCTGAA GTCCCTATTA
AACAACGCCT TAGCCGTCGT GGCGGTTGGA AACTGCGCCG CCTACGGCGG ACTTGTGGCA
AACAAGGTGC TAGAGCCGCC CCCCGGCTTT ACATACCCCA CTTGGTCACC CTCGCCCACT
GGGGCAATAG GCTTCTTCGA CGACCCAATT AGGGGAATAA AAGGCGCAAT TCACCAGCCC
TACTTCCAGC CCGAGATAGA GCCGTTTAGG AAGTACATAG ACGAGGGAGG CGTGCCCGAC
TTCAAAACGA TAAAGCCCGC GGTGGCGGTG CCAGGTTGCC CAGCCAACGG CAACGGCATC
CTGAGGACGT TGGCGCTTTT AACTCTAGTG GCCGCGGGCT ACTTAAAGCC GGATGTGCTA
GAGAGAAAGG CGTTTCTCGA CAAATACGCG AGGCCTAGGT TTATCTTTGA GTTAACCGTC
CATGAGCAGT GTCCAAGGGC CGCTTGGTAC GCCGCGGGCA ACTTTAGGCC AACTCCGGGC
GCCGGAGATG GGAAGTGTCT ATTTGAGGTG GGATGCAAAG GGCCCATATC TAACTGCCCG
TGGAACAAGG TGGGGTGGGT CAGCGGCGTT GGAGGGCCCA CGAGGACAGG CGGCGTGTGT
ATTGGCTGCA CTATGCCGGG CTTCACAGAC GCATATGAGC CCTTCTGGGC TCCGCTGAAT
GCGCCGAGGC TCCCTGACAC GACTGCGATA GCGGTGGGCG TTGGCACAGG CGTGGCGCTG
GGCGCACTGG GGGCATATGC CCTGGCTCGC GCGGTCAAAA AGGAGGGTGT AAAGGAGGAG
AAGAAATGA
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| Protein sequence | MVKITRRDFI RAGSLAAALS ALNWSALVKA AGEAVRSGAV NIVWFEAQDC AGNTTAVIQA
TDPSLLDVLL GTTPLVGPGT VRLIFHETVM PQWGTYHVKQ ASDVASEKIL ESYVEHQPPP
GDAMKILEEI AQGKYGPYVL VLEGSFPQEY GIEGSNIKQE GGYYCVVGHK TCTAWLKSLL
NNALAVVAVG NCAAYGGLVA NKVLEPPPGF TYPTWSPSPT GAIGFFDDPI RGIKGAIHQP
YFQPEIEPFR KYIDEGGVPD FKTIKPAVAV PGCPANGNGI LRTLALLTLV AAGYLKPDVL
ERKAFLDKYA RPRFIFELTV HEQCPRAAWY AAGNFRPTPG AGDGKCLFEV GCKGPISNCP
WNKVGWVSGV GGPTRTGGVC IGCTMPGFTD AYEPFWAPLN APRLPDTTAI AVGVGTGVAL
GALGAYALAR AVKKEGVKEE KK
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