Gene Pcal_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1397 
Symbol 
ID4909109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1311012 
End bp1311689 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content65% 
IMG OID640125147 
ProductABC transporter related 
Protein accessionYP_001056283 
Protein GI126460005 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3839] ABC-type sugar transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0983365 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTCG AGGTAGAGGG CCTCGAGGCT AGGCGGGGGC GCTTCCGCCT CTACGTGGAG 
AGGCTAGTGG TAAACTCCGT GGTGGCTGTG GTGGGGAGAA ACGGCAGCGG AAAGACCACG 
TTGCTGGACG CTATCGCCGG CTTCATAGAG GCGAGGGGCC GCATAGTGGC CTGCGGCCGC 
GACGTGTCCC ACCTCCCGCC CCACAGGCGG GGCCTAGCGT ATGTCCAGTC CACCCCCATA 
GACCCCCCGC AGAGGGTGGG GGCATTCCTC CGCGCGGTGG CCCGTCTACA TGGCACAGAG 
GGCCTTGTGG ACGAGGTGGC GAGCCGCCTC GGCATATCCC ACCTCTTGGA CAGGGGGAGG 
GGCCTATCCA CTGGGCAAAA GCAGCTAGTC AACCTAGCGG CGGCCCTTCT GGCGCGGCCA 
TGCGCCTTCC TCATGGACGA GCCCACCTCC CACCTAGACT GGGTCAACAA AAGGGCCTTC 
AACGACGTGG TGAAGAGGCT GGGGGTGCCC ACTCTCTACG TGACTCACGA CCCCCTCGAG 
GCACTCTACG TGGCCGACGT GTTGTGCGTA ATGGAGGAGG GCCGTCTGAC TAAGTGCGTG 
GAGAAGCCCA CGGACGCCGC CTCTGCCTAC AGAGCCGCCG AGGAGTTCGC CCTCAAGTTG 
TTTAAGGGGG TCTTTTAA
 
Protein sequence
MALEVEGLEA RRGRFRLYVE RLVVNSVVAV VGRNGSGKTT LLDAIAGFIE ARGRIVACGR 
DVSHLPPHRR GLAYVQSTPI DPPQRVGAFL RAVARLHGTE GLVDEVASRL GISHLLDRGR 
GLSTGQKQLV NLAAALLARP CAFLMDEPTS HLDWVNKRAF NDVVKRLGVP TLYVTHDPLE 
ALYVADVLCV MEEGRLTKCV EKPTDAASAY RAAEEFALKL FKGVF