Gene Pcal_1367 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1367 
Symbol 
ID4909325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1281688 
End bp1282824 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content58% 
IMG OID640125118 
Productperiplasmic solute binding protein 
Protein accessionYP_001056254 
Protein GI126459976 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.508502 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCGT GTACTACGAG GTGCTGTGCA CAACATTTAA AAATGGAAAT TTGTAGGGTG 
CTCATGCCGA TCGAAAAACG GTTCTCGGTC TACCTCGCAC TGGCGGCTCT GCTGGCGGTG
GCTGTGCATG GGGCAAAGAT CGTGGTGTCG TTCCCCGCGT ACAACGTGGT GCTCAAGGAG
GCGTTCCCGC AGGTGGAGGT AATCCTCTTG ACGAGGGGCG CCGCGGATCC GCACGAGTAT
CAACTCACGC CGCAAGACCT CGAGTTTCTC AAGTCGCTGG GGCCAAGCGA CGTCATTGTG
AGCTCGATGC ACGCGCCCTT TGAGCTAAAG ATCGCTGAGA TGGTGAAAAG GGGCGAGATC
AGGGCCAAGA TGATAGACAT CACGCAGCTG TACACCTTCT TAACCTTCGA CGGAAAAGAG
GTGCGCCTAG AGGAGGACCA CAACCATGAA CACGACCATC ACCATGGAGG CGAAGGGTAC
AGCCACGAGG AGCATGGCAG TGTGAACATG CACGAGCACG GGCTCTACCC GCCCAACGTC
GTAAGGCTCA TACGCGCAGT GTCTGAAGCC ACCGGCCTCA GCCCCGACCA GCGGTTTCTG
CAGAGGCTGG AGGAGTTGAA CAAGACTTAT GCGGGTAAGT TCACCGGGAT GGCTGTGGCA
ATTACGCCGG CCGCCCAGTA CATACTCTAC TGGCTCGGGT ATAGAGATAT AGTGGTCTTA
GTAAAAGAGG CGGGAGTGCC CCCGACCCCC CAGGACTTGG AAAAGGCTAT ACAGTACGTG
AAGGAGGGCG CACCTGCGTT AGCGGCGTAT GTGAGCGGAG AGAGGCCCAG AATCGTGGAC
CAATTCATTC AAAAAGTCGA GGAGGCCGGG GTGAGCAACC CGAAAATAGT GGCGGAAAGC
TTTGCCAACA GCTACATCGA CACTCTTGCC AGAGTCATAG AGAAAATAGC CGCACAGTTC
ACAGCGGCTA AGACCAGCGT GGCTACTGGC ACCACAACGC AACCCCACGC GCCGCAACAA
ACCGCCGCTC CCACGTCCGC AGGTCAGTGG GACAGTGCAT TGACGTGGAC GCTAGCGGCT
GTGGTAGCCG TAGTCATCGT CGGAGTGGGC ATTTGGGCGC TGAGGAGGCG CAGGTAG
 
Protein sequence
MTACTTRCCA QHLKMEICRV LMPIEKRFSV YLALAALLAV AVHGAKIVVS FPAYNVVLKE 
AFPQVEVILL TRGAADPHEY QLTPQDLEFL KSLGPSDVIV SSMHAPFELK IAEMVKRGEI
RAKMIDITQL YTFLTFDGKE VRLEEDHNHE HDHHHGGEGY SHEEHGSVNM HEHGLYPPNV
VRLIRAVSEA TGLSPDQRFL QRLEELNKTY AGKFTGMAVA ITPAAQYILY WLGYRDIVVL
VKEAGVPPTP QDLEKAIQYV KEGAPALAAY VSGERPRIVD QFIQKVEEAG VSNPKIVAES
FANSYIDTLA RVIEKIAAQF TAAKTSVATG TTTQPHAPQQ TAAPTSAGQW DSALTWTLAA
VVAVVIVGVG IWALRRRR