Gene Pcal_1300 details

Gene Information

• Locus tag: Pcal_1300
• ID: 4909138
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1217886
• End bp: 1218443
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640125053
• Product: PaREP1 domain-containing protein
• Protein accession: YP_001056190
• Protein GI: 126459912

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 0.0833015
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCAGCC CCCCGCTCAG GAGGGCAATT CTTATATTTC CCGCCGGGGG CGTGGAGGAG 
GTGGGGCGCC AGTGGAAGGA CTTGAAGAAG TATGTAGAGG CGCGCGTGGC GGAGGCGGTT 
GCGGAGTTTG AGTTGGCGGG GGAGTTTCTT GAGGGTGGTC TGCTCAGGGG CGCGGCTGGG 
AGGGCGTTTC AGGGGTGGAG GGCGGCGCTG GCGGCGGCCG CGGCGGTGAG GCGGGAGGCG 
CTGAAGGGCG AATACGCGGG CTTTGTCAAG ACTAGGGAGG GGGAGAGGGT TGAGAAGGTG 
GACTTCGTGG TGGCGGTGAT GCCCACGTCG CAGATGAAGA AGGTGGCGAA GGTCCTCTCA 
GGGGACTTCG GCGACGTGGT CGTCTTGCTC ACAGAGCTGG CCTTGGACCT CCGCGAGTTT 
CGGCACAGTG GGCTCGACCC GGCGGGGGTG CTGAGCCGCT ACGCCGACTT AAGGGACGTG 
GAGGACGACG TGAGGCTCCT CGTGGCTAGG GGGAGGGAGT TTGTGGAGGG GGTTAGGAGG 
GGCTTGGCGG GGGGCTAG 

 

Protein sequence

MSSPPLRRAI LIFPAGGVEE VGRQWKDLKK YVEARVAEAV AEFELAGEFL EGGLLRGAAG 
RAFQGWRAAL AAAAAVRREA LKGEYAGFVK TREGERVEKV DFVVAVMPTS QMKKVAKVLS 
GDFGDVVVLL TELALDLREF RHSGLDPAGV LSRYADLRDV EDDVRLLVAR GREFVEGVRR 
GLAGG