| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1285 |
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| Symbol | |
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| ID | 4909309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1197982 |
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| End bp | 1198902 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125038 |
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| Product | CRISPR-associated RAMP Cmr4 family protein family protein |
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| Protein accession | YP_001056175 |
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| Protein GI | 126459897 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1336] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR02580] CRISPR-associated RAMP protein, Cmr4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0121106 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGGCA AATTGATGTG GATACTGTCG CTCACCTCTC TACACCCAGG CGTGGGTAGG
AGCGAGGAGG CCCAGGTGGA CCTCCCCGTC CAGCGGGACG AGTTCGGCCT GCCCACAATA
TGGGCGTCGT CCCTCAAGGG CGCCATTAGG AGCCGGATAG AGAAGACGCT CTTCAACAAC
GGGGTCTGCG TCGGCGACAA AGGCGAGTGC GCCACCTTCC TCGCCGCCTT TGGCCCACGC
CCCGACGCCG CCCACGAACA CGCCTCGGGC GTCGTCTTCC TAGACGCAAA ACTCGTGGCA
ATCCCCGCCA GGTCGCTGAG GGGGGTATGG CTGTGGGCCA CCTCCCCCAT GTTGCTGAAC
TTCGTGAAGC TCTACGCAAA GGCCCTAGGC GTCGATGTAC AACTGCCGCA GCCCCCCGCC
GTGAAGGAGG GCCAAGTAGC GCTCACAAGC GGCGACTACG CCATAGACGG CAAACTCGCG
GTAATAAACG AGATGGAGTT CGAAGTCGCC ACAACCCAAG CCCCACCCCT CAACCTACCG
CCCATCAAGG CCGCAACCCA GATAGTGGGG ACGCGAGGCG TGGCGTACCT CCACGACAAC
GACCTCCTAC AGGTAGTGAA GAGGAGCCTC CTCGTCCAAT ACCGCGTTAG GCTAAACGAG
AAAAAGACAG TAGAGACTGG GCCATGGAGC GAGGAGTACA TACCACCATT CACAGTCTTC
GCCTCAGGCA TATACTGCGC CAGAAAGCCA GACAAGGTAA AGGTAAAACT CCCCAAGAAA
GAGGGGCAAG ATCAACACCC AGTGGAGGAG GTCGACGTGA AGGGAGACCT CTGCCAGTAC
GTGGCTGGGA AGGCCAGCGG CGTCTTCTGG CTCGGCGGAA AGGAGACTGT GGGAAAGGGC
CTGGCGGAGG TGATATGGTA G
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| Protein sequence | MNGKLMWILS LTSLHPGVGR SEEAQVDLPV QRDEFGLPTI WASSLKGAIR SRIEKTLFNN
GVCVGDKGEC ATFLAAFGPR PDAAHEHASG VVFLDAKLVA IPARSLRGVW LWATSPMLLN
FVKLYAKALG VDVQLPQPPA VKEGQVALTS GDYAIDGKLA VINEMEFEVA TTQAPPLNLP
PIKAATQIVG TRGVAYLHDN DLLQVVKRSL LVQYRVRLNE KKTVETGPWS EEYIPPFTVF
ASGIYCARKP DKVKVKLPKK EGQDQHPVEE VDVKGDLCQY VAGKASGVFW LGGKETVGKG
LAEVIW
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