| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1278 |
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| Symbol | |
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| ID | 4908827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1186215 |
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| End bp | 1187024 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640125031 |
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| Product | CRISPR-associated Cas6 family protein |
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| Protein accession | YP_001056168 |
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| Protein GI | 126459890 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5551] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0372013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGTATG TGGTGCGGGT GGTGTTGGCG GCTCGGGAGG GGTTCTCGCT GGGGGGGTTC
ACGGGGACTG TGGTGGAGTC GCTGGTGCTT AGGCTGACTG ACCCCTCTCT CCACGGCGCG
GGGCCGAAGC CCTTCTCCGT GACGCCGCTC TTCGTCGGGG GGAGGCCGGT GGTGGACTTG
GCTGTGGTGG GGCCGGGGGA CCTCTTGGAG TTTCGGGTGG GCTTCGCGGG TGAGGGGCTG
GCGAGGGGGT TTGTGGAGCG GCTCCTGGGG GGTGGGGTGG AGCTCTTTGG GCGGAGGGTG
GAGGTGGCTG AGGTGGAGAT GCGGGACGTG TGGCTGGACC CCCTCCCCGA GGCGAGGTGC
TTTAAGCTGG AGTTCCTCAC CCCGACGAGG TTCGCCGTGC CGCCGCTTTA CAAGAGGAGG
CGGGCCCTCT TCGACTTCCT TCCCCGCCCC CTGACCCTCT TCAAGTCCGC GGTGAGGCAC
GGGAGGGAGC TCGGCCTGTT GAAGCTCGGC GCGCCCTTCC TCCGCTGGGT CTACACCTAC
GTCGCCCTCA CCGACGTGGG GTGCTGGTGC AGGAGGCGCG GCTCCTGCGT GAGGACAGTG
AAGCTTCCAA ACGGCGGCGT CGCCAGGGGC TTCGTGGGGT GGGCCCTCTA CCGCATCTAC
GGCAAGAGGC GCCTCGCCGA CGTGTGGAAG ACCATCCGCC TAATGGAGGC CTTCAACGTG
GGCACAGGCC GCGGCATGGG CCTAGGCGTA GTCCGCGCCA CCCCCCTCCC CTGCCCCGGC
GAAACAGCCA AAGACGGCGG CCAGCGGTAG
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| Protein sequence | MAYVVRVVLA AREGFSLGGF TGTVVESLVL RLTDPSLHGA GPKPFSVTPL FVGGRPVVDL
AVVGPGDLLE FRVGFAGEGL ARGFVERLLG GGVELFGRRV EVAEVEMRDV WLDPLPEARC
FKLEFLTPTR FAVPPLYKRR RALFDFLPRP LTLFKSAVRH GRELGLLKLG APFLRWVYTY
VALTDVGCWC RRRGSCVRTV KLPNGGVARG FVGWALYRIY GKRRLADVWK TIRLMEAFNV
GTGRGMGLGV VRATPLPCPG ETAKDGGQR
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