Gene Pcal_1228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1228 
Symbol 
ID4910105 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1142476 
End bp1143444 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content54% 
IMG OID640124982 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001056119 
Protein GI126459841 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.214428 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCC TCGAGGTGCG AGACTTAACC GTATACTTCT ACACCTACGC CGGAGTTGTC 
AGAGCCGTGG AAGGCGTGTC CTTTGACTTA TACAAGGGGG AGACTCTCGT CATCGTGGGA 
GAGACTGGGA GCGGCAAGAC GGTGACAACT AGGGCTATTA CCAGGCTTAT ACAGCCGCCT 
GGAAGAATAG TGTCGGGGTC TGTCATATAT AGGAGAGACG GCGAGGAGGT GGATCTGCTG 
AAATTGCCCG AGGAGGAGCT TAGGAAGATA AGAGGCTCTG AGATAGCCTA CGTGTTTCAA 
GACCCGTCCT CAGCCCTAGA CCCACTTTAC ACCGTTGGCT ACCAGGTGGG AGAGACCGTG 
GCGGCGCATA GGGGTGGGAA AATTAAGCAA TACTTTAGAG ACGCTGTAGA GCTACTGCGC 
AAAGTCTTGA TACCAGAGCC GGAGAGTAGG GCCAAGTCGT ATCCCCACCA GCTGTCCGGC 
GGCATGAAGC AGAGGTCCGT CATAGCCATG GCTATAAGCA ATCGGCCGAG GATCCTCATC 
GCAGATGAGC CCACTACGGC GGTGGACGTG ACTGTGCAGG CTCAGATACT CCACCTATTT 
AAACAGCTCA AGGACGAGCT GGGCATGTCC ATAATCTTCA TTACGCACAA CATGGGGCTA 
GTGGCGGAGT TCGCCGACAG GGTGTTGGTG ATGTACGGGG GGAAGATCGT GGAAGAGGCT 
CCAACAGAGG AGCTCTTTGA AAAGCCAATG CACCCCTACA CCAAGGGCCT CTTGAGGGCA 
GTTGTAAACC CAATTCAGCC CCAGGAGAGA CTAGAGCCAG TGCCGGGCAC TATACCCAAC 
TTGATCAACC CGCCGCCTGG ATGTAGATTT CACCCACGTT GTCCATATGT GATAAAGGGC 
AAGTGCGAAA GAGAAGAGCC CCCGTTGGTG GGGACTAGGC ACAAGGTTGC CTGTTGGTTG 
TACACATGA
 
Protein sequence
MKILEVRDLT VYFYTYAGVV RAVEGVSFDL YKGETLVIVG ETGSGKTVTT RAITRLIQPP 
GRIVSGSVIY RRDGEEVDLL KLPEEELRKI RGSEIAYVFQ DPSSALDPLY TVGYQVGETV 
AAHRGGKIKQ YFRDAVELLR KVLIPEPESR AKSYPHQLSG GMKQRSVIAM AISNRPRILI 
ADEPTTAVDV TVQAQILHLF KQLKDELGMS IIFITHNMGL VAEFADRVLV MYGGKIVEEA 
PTEELFEKPM HPYTKGLLRA VVNPIQPQER LEPVPGTIPN LINPPPGCRF HPRCPYVIKG 
KCEREEPPLV GTRHKVACWL YT