| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1164 |
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| Symbol | |
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| ID | 4908553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1086600 |
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| End bp | 1087127 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640124918 |
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| Product | THUMP domain-containing protein |
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| Protein accession | YP_001056055 |
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| Protein GI | 126459777 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1818] Predicted RNA-binding protein, contains THUMP domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTTGGA ACTTAGTTGT AGCCACTGGG TGGCGGCAGG AGAGACTCTG CATGGAGGAG
CTGTACAGGG TGGGGGACGT AGTTGGGAGG AGGGTAGAGG AGGTGTGGTT TACTGGGTTT
GACGGTCTGC TGACGGCGAG GGTGGACGGG GACTCCGTGG AGTTTGTGAA GCTGTTAATC
GACGTGGTTC AGGCGGGGTA CTACGTCCCT AGGTATATCC TCCGGGCGAC GCCTATCATG
GCCGTGGTGA AGACCGACTT GGATGAGATA CAGAAGGTGG TGGGGGAGCT GGCGGAGCGG
TTTATAGCGC CCGGCGAGAC TTTTAAAATT GAGTTGAAGA AGCGGGGGGT AAAGTTCGAC
CGAATGGCCG TAATTGAGTA TGTGGCTAAG GCGGTGAATA GGAAGGTCAA CCTCACCAGC
CCGGACAAGG TGGTGTGGGT GGAGATGTTC CCCTCGCGCA CTGGCGTCTC TGTGATTCGG
GAGAGCGAGA ACTTCTCGCT GATGAAGGCC CGGGCGGCGC ATGAATGA
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| Protein sequence | MSWNLVVATG WRQERLCMEE LYRVGDVVGR RVEEVWFTGF DGLLTARVDG DSVEFVKLLI
DVVQAGYYVP RYILRATPIM AVVKTDLDEI QKVVGELAER FIAPGETFKI ELKKRGVKFD
RMAVIEYVAK AVNRKVNLTS PDKVVWVEMF PSRTGVSVIR ESENFSLMKA RAAHE
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