| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1117 |
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| Symbol | |
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| ID | 4910287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1049728 |
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| End bp | 1051476 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640124871 |
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| Product | DEAD_2 domain-containing protein |
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| Protein accession | YP_001056008 |
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| Protein GI | 126459730 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACATTT TCCCCTACCA AGAGCCGCGG CCCTTCCAGA GAGAGATCTA CTTAACCGTA
TACGAGGCGC TGAGGAGGGG GCGACCGGCG TTAATAAACG CGCCCACTGG CCTCGGCAAG
ACGGCTGCTG TGTTAAGCGC TGCTGTGAAA TACGCCCTTG AGACAGGCGT GAAGATACAC
TACGCCGTGA GGACGAGGAA CGAGCTTGTA GCCCCCCTGC GCGAGCTCGC CAGACTGAGG
GAGAGGGGCG TCGAGGTGGA CTACGTGGTG ATCAAGAGCA GGCAGGACAT GTGTTGCTAC
GCCCAGATGA AGAAAATGGA GTACCTAGCC TTCCTCGCCG AGTGCAACCT CCTAAAGGCC
ATGGGCAAAT GCGAGTACTA CCCCCCGAAA GAGGTGGACG TGTCTCTCCG CGACGTGAAT
ACCTACGTGA AATACCTCTG CGCACTGCGC ACATGTCCCT ATGAATATGC AAAAGAGAGG
TTAGACAAGG CAACGGTAGC CGTCTCCACG TACTACTACG TATTTGGCTG GGAGAGAAAT
CTAAAGGGCA AGGTGGTAAT CGTGGACGAG GCACACGCCC TCTTCGACTC TGTGACAAGC
ATCTACACAC TCACAGCCAC AGAACAAGAC TTGAGAGCCG CCTATAGAGA GTGCAGGAAG
TACGGCCTTG TAGAAGAGGC CGGCGCCATA TACCGCCTCT TGACCCTGGT CAGAAAGACG
TCAGGCGAAG TGCCCGACCT ACTCGGCGAG CTAGAGGCCG TGAACTTAGA CGCCGCAGTG
AGAGAAATCG TTAAGAGAAA GGCGGAGGAG GGCAAGAGCC CGTACACTCC GCTACTATTA
GTGAGAGAGC TCAGAAACGC GCTGAAGAGC AGGCTGGGGT ACATAGCCGA GGTGAGGACA
GTTGACTCCT CAAAGGCCCT GGTCTTAACC CCCATAGACC CCGTCTCGAT AGTCAAAAAA
GCCGTAGAAG AGGCCGTGAA CACTATATAC ATAAGCGGCA CTTTGCCCAT CAAGCTGTTC
TCCGAAATGC TGGGCCTTAG GGACTACTAC TCTCTAGACA TAAGCTTTAG GCAGTACATA
CCGCGGGAGA ACTACATCTC GGTAATCGAC ATAGGCGTCA CCACGAGATA TCAAGAAAGG
GGAGAGGAGA TGTACCTCAA GCTAGCGGAG AGAATAGCGG CCGTGGTAAA CCTCTCCCCA
GGCGGCGTAT TGGCAGTATT CCCCTCGTAC GAGGTCATGA AGGCCGTTAG AAAGTACCTC
CGCTTCTCCA TACCCCACTG GTACGAGGGA GGCGACGGAG TGAGCTGGGG GTCTCTACCC
GAGAAGTTTT TCATCGGCGC CGTGGCGAGG GGGAGGTACA CAGAGGGCGT CGAGTACACG
GCAGGCGGCA AAAACTACTT AACCACGGTA GTCGTGGTAG GGGTCCCCTA CCCAGAGCCT
TCCCCCTACC TGGATAGAAG AGTTGAAGCT CTGCGGCCCC GCATGGGCGA ATTGGCGTGG
AGCGCCGTCT ACCTCTACCA AGCCTTGGTA AGCGTGCGGC AAGCGGTAGG TAGACTTTTC
CGAGGCCCGA ATGACAGAGG CGCCTTGATC TTCCTAGACA GACGCTACGC CGAGCCGGAG
GTTTGGAACA ACTTGAGGGA CCTCCTCGAG GGATCCCTCA TCGTCAACAA CGTAGAGGAG
GCGGCCGACG CGTTAGAGGC CTTTTTCACC TCTTCGAGAG AAGCCGCCAG AGGGCAATGG
CGACTATGA
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| Protein sequence | MDIFPYQEPR PFQREIYLTV YEALRRGRPA LINAPTGLGK TAAVLSAAVK YALETGVKIH
YAVRTRNELV APLRELARLR ERGVEVDYVV IKSRQDMCCY AQMKKMEYLA FLAECNLLKA
MGKCEYYPPK EVDVSLRDVN TYVKYLCALR TCPYEYAKER LDKATVAVST YYYVFGWERN
LKGKVVIVDE AHALFDSVTS IYTLTATEQD LRAAYRECRK YGLVEEAGAI YRLLTLVRKT
SGEVPDLLGE LEAVNLDAAV REIVKRKAEE GKSPYTPLLL VRELRNALKS RLGYIAEVRT
VDSSKALVLT PIDPVSIVKK AVEEAVNTIY ISGTLPIKLF SEMLGLRDYY SLDISFRQYI
PRENYISVID IGVTTRYQER GEEMYLKLAE RIAAVVNLSP GGVLAVFPSY EVMKAVRKYL
RFSIPHWYEG GDGVSWGSLP EKFFIGAVAR GRYTEGVEYT AGGKNYLTTV VVVGVPYPEP
SPYLDRRVEA LRPRMGELAW SAVYLYQALV SVRQAVGRLF RGPNDRGALI FLDRRYAEPE
VWNNLRDLLE GSLIVNNVEE AADALEAFFT SSREAARGQW RL
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