Gene Pcal_1090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1090 
Symbol 
ID4909987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1024140 
End bp1024622 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content61% 
IMG OID640124842 
Producthypothetical protein 
Protein accessionYP_001055981 
Protein GI126459703 
COG category[S] Function unknown 
COG ID[COG1901] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCTTCC TGATAAAAAG CGACACTGTC TGCCCCTGGA CTATAGACGT CAAGGCCCTG 
GTAAAGGGGC GTTTCGACGT CTTGGTGGAC TTCGCCGCGG AGTCCATTCG GGGCGGGGCC
CGGGAGGTCT ACATAGTGCT CTGCGACGGG ACCACATACC GCGTGTCGTC TGTGCCAGCC
GGCCCCGCCG TAGAGGTCGC CTCTTGGCTT CTCTCACAGC CGAGCTTCAA GGCCTCTCTC
GAGGCAATCC TCGCCAACTA CCGCCGCGTC TACTACCTCC ACGAGAGGGG GGTGGACATC
TTGAACGCCG ACTTGTCTGG AGATGCCTTG TACGTCTTCG GCGACCACGA CGGCTTGTCT
AGGGAGGACG AGGAAGTCCT TGCCAAGAGG GCGCAGTGGC TCTCCCTGGG CCCAGTGCCC
TACATGTCTT GGCAGGCGGC GGCCTACGTG GCCTTCCTCT TGAGGAGACT TAATAAGCTG
TAG
 
Protein sequence
MSFLIKSDTV CPWTIDVKAL VKGRFDVLVD FAAESIRGGA REVYIVLCDG TTYRVSSVPA 
GPAVEVASWL LSQPSFKASL EAILANYRRV YYLHERGVDI LNADLSGDAL YVFGDHDGLS
REDEEVLAKR AQWLSLGPVP YMSWQAAAYV AFLLRRLNKL