| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1025 |
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| Symbol | |
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| ID | 4908561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 962390 |
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| End bp | 963100 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640124777 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_001055916 |
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| Protein GI | 126459638 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0609004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTCGACA ACCACATACA CTGCCACGAG TTACCGGCTG AGGAGTTGGA GGAGTACAGG
CGGGAGTGGA CGCTGGTATG CGTCTCAGAC GACTTAGCCA CTTCTAAAAA GACACTGGAG
ATGGAGGGCG TGGTGAGGTG TCTAGGGATA CATCCCTGGC AAGTGGAAAA GGCAGAGCCC
GGGGACTTGT CCACAGTGCT TAAGCTCCTG GAGAGGCGGG AGGTCCCCTG CGTGGGAGAG
GTGGGGTTAG ACAAGAGGTT TGTCCCCCAC AGCTTTGACA AACAGAGGGA GTACTTCAGA
GCCTTCCTAC GCGCGGCTCG CGAGCTAGAC CTAGTGGTCA ACGTCCACGC CCCAGACGCG
TGGGCCGACG TGGTGGAGGA GCTTAGACGC TCCGACGTGG ATAGAGCGCT AATCCACTGG
TACACTGGCC CCCTACACCT TTTGGACACT ATAAGGGACC TGGGGTACTA CATCTCAATA
AACCCAGCCG TGACCATTCA GAAAAAGCAC CAAGAGGTCG CGGCAGCTGC GGACAGGAGG
ATTGTCCTTG TGGAAAGCGA CGGGCCCTAC GAGTATAGGG GGCTGAGACT CGTGCCCCCG
CTGATCGAGA AGACTGTGGA GAAGATGGCG GAGCTCTGGT CCACCACGCC CGAGTACGTG
AGAGAGATCG TCGAGGAGAA CGCCAAGAGG CTATGGCGGA GGCTTTGGTA G
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| Protein sequence | MFDNHIHCHE LPAEELEEYR REWTLVCVSD DLATSKKTLE MEGVVRCLGI HPWQVEKAEP
GDLSTVLKLL ERREVPCVGE VGLDKRFVPH SFDKQREYFR AFLRAARELD LVVNVHAPDA
WADVVEELRR SDVDRALIHW YTGPLHLLDT IRDLGYYISI NPAVTIQKKH QEVAAAADRR
IVLVESDGPY EYRGLRLVPP LIEKTVEKMA ELWSTTPEYV REIVEENAKR LWRRLW
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