Gene Pcal_0972 details

Gene Information

• Locus tag: Pcal_0972
• Symbol: rps13p
• ID: 4908672
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: -
• Start bp: 917124
• End bp: 917585
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640124721
• Product: 30S ribosomal protein S13P
• Protein accession: YP_001055863
• Protein GI: 126459585
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0099] Ribosomal protein S13
• TIGRFAM ID: [TIGR03629] archaeal ribosomal protein S13P

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.0987409
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCTCAAG AGATACGTGC CATTGTCCGC ATTGGGGACA CGGACTTGGA CGGGAACAAG 
ACTGTGGCGT ATGCCTTGGC CAAGATTAGG GGCATTGGAA TTGCCACTGC CTATGCCATA 
TGTAGAAAGC TTGGGATTGA CCCCCACGCG ACGCTGGGCC TGCTCCCGGA GGATCAGATA 
AACAAGTTGG ACTGGGCTGT GAGAAATCTC CACGAGCTTG CCCCGGCGTG GTTTTTGAAC 
AGGAGGAAGG ACCCCGAGAC TGGGCGAGAC CTCCACTTGA TAGGCTCGGA GCTTGTCCTA 
GCGGCTAAGA GGGACGTCGA CTTGATGAAG AAGTTGAAGA GTTGGAAGGG CATACGCCAC 
TCTCTTGGCC TAAAGGTGAG GGGCCAGAGG ACTGTGACCA CGGGCAGATT CGGCGCGACT 
GCTGGCGTCA CTAAGAAGAA GGCGGCGCCT GGAGGCAAGT AA 

 

Protein sequence

MAQEIRAIVR IGDTDLDGNK TVAYALAKIR GIGIATAYAI CRKLGIDPHA TLGLLPEDQI 
NKLDWAVRNL HELAPAWFLN RRKDPETGRD LHLIGSELVL AAKRDVDLMK KLKSWKGIRH 
SLGLKVRGQR TVTTGRFGAT AGVTKKKAAP GGK