| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0934 |
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| Symbol | |
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| ID | 4910114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 884650 |
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| End bp | 885357 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640124682 |
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| Product | exosome complex RNA-binding protein Rrp4 |
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| Protein accession | YP_001055825 |
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| Protein GI | 126459547 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1097] RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACTACG TAACCCCCCG CCAGTTGATC TTCCCAGGGG ACCTAGTGGC CACGGCAGAT
AGCAGAGTGG AGGGGCCTGT ATATGTGGAC AATGGAAAGA TTAGAAGCGC CGTGGTGGGC
CTCGTGGAGT TCAGAGAAGA CGTCGTTGTG ATAGTCCCGC TAGATGGAGT CTACAAGCCC
AAAAAAGGCG ACTTAGTAAT CGGCTACGTA ACAGACGTAT TAGCCACGGG CTGGGAGGTG
GACGTCCGAA CCTTTATGCC GGCCTACCTC CCAGTAAGCG AGGCTCTCCA CAAACACGTG
GACTTAGAAA CTACGCCTCT CACAACCTTC TTAAACATCG GAGACGTAAT TGTGGCCAAG
GTAAAAGACG TCGATTTAAC AGACGAGTAC CCCGTGGTGT TGACTCTAAA AGAGGAGAGA
GTGGGCAAAG TGGAAAGCGG CACAGTGGTG GAGATAGCCC CGGTGAAAGT GCCCCGCGTC
GTCGGGAAAA AGGGCAGCAT GTTGGCGGTG CTTGCCGAGG TGGGGTGCGA CATAGTGGTA
GGCCAAAACG GGCGCATCTG GGTCAAGTGC AAAAGCCCAA GAGACGAGGT ATTTTTAACA
AGTCTCATAA AGAAGATAGA GGCAGAAAGC CACGTCATGG GGCTAACTGA CAGAGTAAAG
GCGGAGGTGG AAAATTATAA GAAGATGAGA CAACAAGCGC AGGCATGA
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| Protein sequence | MYYVTPRQLI FPGDLVATAD SRVEGPVYVD NGKIRSAVVG LVEFREDVVV IVPLDGVYKP
KKGDLVIGYV TDVLATGWEV DVRTFMPAYL PVSEALHKHV DLETTPLTTF LNIGDVIVAK
VKDVDLTDEY PVVLTLKEER VGKVESGTVV EIAPVKVPRV VGKKGSMLAV LAEVGCDIVV
GQNGRIWVKC KSPRDEVFLT SLIKKIEAES HVMGLTDRVK AEVENYKKMR QQAQA
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