| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0673 |
|---|
| Symbol | |
|---|
| ID | 4909752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 635837 |
|---|
| End bp | 637042 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640124422 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001055565 |
|---|
| Protein GI | 126459287 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.317813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTCG CCGCCTCATA TACGCCCATA TTTGTGGCTA GGATTGGATC AGGCGCCAGC
GCTTTTCTAG TGGTGAAGTT GGCCAGCGGC GGGGCCTTAG AGGCTGGGGC GGTATTGGCC
GCCTATCCAT TCTTGGAGGC GATAGGCGCG CTGATTGCGG GGCGTTGGTC CGACTTGGCG
GGCCGTAAGA AGACCCTCCT CGTGGGGTAC GTGGTGAGGT CTCTCGCCAT GTTGGCGCTT
GCGTGGGCCT TCTTTGTCCA CGAGTCGCCG GTCCTAGAGG CCGTGCTCAA CGGCATAATA
GGCTTCACCA CCGCGTTTAT ACTCACCGCC TCGTTGACCA TGGCCACAGA CCTCACAGAG
GTGCGCAACA GGGGGCTGGG CATGGGCGGC TTCGAGTTTG TCAACTTGGG TAGCTACGGG
GTGGGCTACC TCCTGGGCTC CGCCTTGTAT ATCATATTTC CTGACGCAAG GGCTTACTTA
GTCATTGCCG TGTTGACGGC CTTATCCACG CCGCTCTTTG CCATGTTTCT GCAGGAAACT
CGCCCAGTCG CCCCGGCGGA GGGCCGCCTT CTCTTCTCGG TGCTTCCGCC GTCTGCTGTG
GCCTTGTTGC CCGTGTGGTT TGCGCTAACT ACGATAATAG GGCTTGCGAT GTATACGCCG
AGGATTTTAG ATGTGGAGGC AGGCGCCCAC GGTGCAGTGC AACAAATAGT GGATAAGCTG
GGCGGGAACT TAGTGGTCGG CTTGCTTTTC ATAGGCGCGC TAGCCCTGTT GGGGGCAGGC
GCAATTTTCT TCGGAAGGCT GGCGGATAAG TGGGGCAGGC TTAAGGTGTT CTACCTAGGC
CTTGTGGGCG GCCTCTCTGC CCTCGTGGCG TTAAACGCGG CGTTGCACCT CGGCCTAGGC
CCAGTGGAGG CCGTCGCCCT CACGGCGCCG CTCCTCTTCC TCACCTCGGC CATAGGCCCC
AGCATCTTGG CCCTAATAGG CGACGAGGCC GACATAAGGT ACAGAGGCAC CGTCATGGGG
ATATACAGCG TAGTGCTCGG TCTCGGGATA GGGTTCGGTA GTTGGCTAGC TGGCGTCATT
TCATGGGCTT TCAGCGGCTA CGAGATTAAC GGGCTTGCGG CGGCCGCGCT GGGCGTCTAC
GCGGCGATGA CGTCTATACA CATAGCCTTT GCAAAACGGC AGGGGCTGTT AAGCCAGTTG
AAATAA
|
|---|
| Protein sequence | MRLAASYTPI FVARIGSGAS AFLVVKLASG GALEAGAVLA AYPFLEAIGA LIAGRWSDLA
GRKKTLLVGY VVRSLAMLAL AWAFFVHESP VLEAVLNGII GFTTAFILTA SLTMATDLTE
VRNRGLGMGG FEFVNLGSYG VGYLLGSALY IIFPDARAYL VIAVLTALST PLFAMFLQET
RPVAPAEGRL LFSVLPPSAV ALLPVWFALT TIIGLAMYTP RILDVEAGAH GAVQQIVDKL
GGNLVVGLLF IGALALLGAG AIFFGRLADK WGRLKVFYLG LVGGLSALVA LNAALHLGLG
PVEAVALTAP LLFLTSAIGP SILALIGDEA DIRYRGTVMG IYSVVLGLGI GFGSWLAGVI
SWAFSGYEIN GLAAAALGVY AAMTSIHIAF AKRQGLLSQL K
|
|---|
| |