| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0540 |
|---|
| Symbol | |
|---|
| ID | 4909815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 512670 |
|---|
| End bp | 513911 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640124286 |
|---|
| Product | cytochrome c biogenesis protein, transmembrane region |
|---|
| Protein accession | YP_001055433 |
|---|
| Protein GI | 126459155 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0785] Cytochrome c biogenesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGACGC TCTTGGCAGT ATTGGCGGCG GCGTTTCTCG CCTACTCGCT GACAATAGGC
CAATTACACT TCACAGACGT AAACTCCGGC GACGACTTCA ACAGAGCGCT CGTCGACGGG
CCCGTCCTCA TATTTATACA CCAGCCCAAC TGCCTTGGCT GCGCCAAATT AAAGGGGGAA
GTATTCCCCA AGCCCCAAGT GGCCCAGGCC CTCAGAGGAG TAAACCTAGT CTCCATAGAC
TTGGCCGCCT ACCCCGTGAC AAGCATAAAG GTCGTCGCTG ACGGCTCTGT GTACGTGTAC
CAAGGCTCCC TGAGGGTGTC CAAGGCATCT GGCCAAGTGG AAGTGCCAAT CTACGCTACT
CCAACCCTGG TGCTGGGCTA CGTAAAAAAC GGCACAATAC ACTTAACAAT GGTGATAGTA
GGAGCAGTTG AGGCTCCCCA GTTGATAGAA CTAGTAAAAC TAGCCTACAC CCAACCCACT
GAGGCGACCC CCCGTCCATC CACAACGCAG ACTGCAGAGC CAACGACGGC GACACAAACG
ACGAGCCCCC TGGGAACCGT TGCACAGATA GCCCTCTCCT TCGCGGCCGG CGCCGCTAGC
GTGTTTTCCC CATGCGTCTT GCCCGTCGTC ACTATAGCGG CTACGACATA CCTCGCCAGG
AGGAACTTGG CCCTGGTCTT GTTGGGCATG GTAATATCCT TCGCGGCGTT GGCCGCCCTA
GCCACGACGG CCGCCGCCTG GGCCCGCGCC GCCGCGACCA CAGCCCTCTA CCTGATAGGC
GGGGTGGTGC TAGTGGCCAT TGGGCTCATC TTCGTGATAG AGCGCTTCAA CAAGGCCTTC
CTAATGTGGG TGTCCAGCCT CCAGACCAGG GCCTACAAGC TCACAAAGAG GGGCGCAGGC
GCGGTCGGCG ACTTGGCGCT AGGCGCCTCG CTAGGCGCCG TCTGGATGCC TTGCGTCGCC
CCCTTCCTCG GCGTAGTCGC AATGGGAAGC CTAGTCGCGG CGGCATTGAG CAGGGACTAC
CTCGCCGTGT TCTTCAACAC ATTGGCCTAC GCCGCGGGTC TTGCCGCCGT GATCTACGCA
GTGGTCTACG CGGTTCAGAA AAGCGCCCGT AGAACAGCCA CGCTTAAGTG GAGCAGGCTG
GGCAGGAGGA TAGAATACGC CGTGGGGATA GCCTCAATCG TGCTCGGAAT ATTGCTAATA
GGCGAGGCGT TTGGGCTCAG GACTATAACA CTGCTCGTAT GA
|
|---|
| Protein sequence | MRTLLAVLAA AFLAYSLTIG QLHFTDVNSG DDFNRALVDG PVLIFIHQPN CLGCAKLKGE
VFPKPQVAQA LRGVNLVSID LAAYPVTSIK VVADGSVYVY QGSLRVSKAS GQVEVPIYAT
PTLVLGYVKN GTIHLTMVIV GAVEAPQLIE LVKLAYTQPT EATPRPSTTQ TAEPTTATQT
TSPLGTVAQI ALSFAAGAAS VFSPCVLPVV TIAATTYLAR RNLALVLLGM VISFAALAAL
ATTAAAWARA AATTALYLIG GVVLVAIGLI FVIERFNKAF LMWVSSLQTR AYKLTKRGAG
AVGDLALGAS LGAVWMPCVA PFLGVVAMGS LVAAALSRDY LAVFFNTLAY AAGLAAVIYA
VVYAVQKSAR RTATLKWSRL GRRIEYAVGI ASIVLGILLI GEAFGLRTIT LLV
|
|---|
| |